Gene Information

Name : Desca_1785 (Desca_1785)
Accession : YP_004497544.1
Strain : Desulfotomaculum carboxydivorans CO-1-SRB
Genome accession: NC_015565
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 1909493 - 1909762 bp
Length : 270 bp
Strand : -
Note : KEGG: drm:Dred_2395 flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; Type III secretion protein HrpO; PFAM: Bacterial export protein FliQ, family 3

DNA sequence : 
GTGACGGAAACCTTTGTAATTCACGTAGCCCGGGAGGCTTTAATGATGGTGGTCATTCTGTCCCTGCCGGCCCTGGGGGT
AGCTATGCTGGTGGGCCTCATTATCAGTATTTTACAGGCCACCACCCAAATTCAAGAGCAAACCCTTTCCTTTGTACCTA
AAATGGTGGCGGTTTTTGTAACTTTATTGATTGCCGCCTCCTGGCTTTTGAACATTGCCGTTAACTTTACCACCCGGTTG
TACCAACAGATACCAAATATTGTCCGCTAG

Protein sequence : 
MTETFVIHVAREALMMVVILSLPALGVAMLVGLIISILQATTQIQEQTLSFVPKMVAVFVTLLIAASWLLNIAVNFTTRL
YQQIPNIVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0271 YP_002345353.1 type III secretion apparatus protein Virulence Not named Protein 6e-06 44
lscS AAO18039.1 LscS Virulence TTSS locus Protein 8e-10 43
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 6e-09 43
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 4e-09 43
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 2e-08 41
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 2e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desca_1785 YP_004497544.1 flagellar biosynthetic protein FliQ VFG0395 Protein 5e-10 53
Desca_1785 YP_004497544.1 flagellar biosynthetic protein FliQ VFG0043 Protein 2e-10 48
Desca_1785 YP_004497544.1 flagellar biosynthetic protein FliQ VFG0187 Protein 4e-05 48
Desca_1785 YP_004497544.1 flagellar biosynthetic protein FliQ VFG2132 Protein 1e-11 42
Desca_1785 YP_004497544.1 flagellar biosynthetic protein FliQ VFG1260 Protein 4e-10 41