Gene Information

Name : Desca_0169 (Desca_0169)
Accession : YP_004495985.1
Strain : Desulfotomaculum carboxydivorans CO-1-SRB
Genome accession: NC_015565
Putative virulence/resistance : Virulence
Product : Lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : 6.1.1.6
Position : 179787 - 181316 bp
Length : 1530 bp
Strand : +
Note : PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: drm:Dred_0175 lysyl-tRNA synthetase

DNA sequence : 
ATGGCAGACATGCAGGAAAAGAAACAAGTTCAGCCGGCTCCGCCTGAAGCGGAAGCCGGCCAAAACAATGTAGAGGACCT
TAACGAACTTATGAAGGTCCGCAGAGAAAAACTCAATGAACTTATTAGTCAAGGGATAGACCCCTACGGGCAGAAGTTTG
AGCGTACTCATCTAACGGCTGATATTATAAATAATTTTGCAGCCATGGAAGGACAAGCTGTGGTGATTGCCGGCCGGATC
ATGGCCAAAAGGGTGATGGGCAAGGCCAGTTTTGCCAATTTGCAAGACAGTGCCGGCAATATCCAAATCTATGCCCGGTT
AGATGATTTAGGAGCAGAAGAATACAGCCGGTTTGAAAAATTGGATATCGGCGACATCATTGGCTGTTCCGGCAAGGTCT
TTAAAACCCGTAAAGGTGAAATTACCGTACATATTGAAAAATATACCATGTTGGCTAAGTCATTACGTCCTCTCCCTGAG
AAGTGGCATGGTCTTAAAGATGTTGACCTGCGCTACCGTCAACGGTACGTGGATTTAATTGTCAATCCGGAGGTTAAACA
GACCTTTGTCATTAGAAGTAGAATTGTCAGGGCCATTCGTAACTACCTGGATCAAAGGGGTTTTCTGGAAGTAGAAACCC
CCATGATGCATCCCATTGCCGGTGGAGCCAGTGCCCGGCCCTTTATTACCCACCATAATGCCCTGGACATGAATCTCTAC
ATGAGAATTGCTCCGGAACTTTATCTCAAGCGCTTGCTGGTGGGTGGCTTCGATAAGGTTTATGAAATTAACCGAAACTT
CCGTAATGAGGGGATTTCCACCAAACACAACCCCGAGTTCACCTCCCTTGAATTGTATCAAGCCTATGGTGACTACCATG
ACATGATGGATCTTACCGAAGATCTCATTTCCCATGTGGCCCGGGAAGTGCTGGGTACAACCACTGTAGAGTATGAAGGA
GTAGAAATTAGTTTAGCCAAACCATGGCGCAGGGTCCCTATGCTGGAAATCGTTAAAGAGCACTCTGGTCTGGATTTTAC
CCAGCTCAAAGATGATCAGGCAGCTTACGATGCCGCCAAGGGGTTGGGTCTGGAAATTGAACCCGGTGCTAAATGGGGAG
ATATCCTAAATACTGTGTTCGAGGAAATGGTTGAGGAAAAGCTTATTCAACCGACTTTCGTTATTGATTATCCGGTTGAA
ATTTCTCCTCTGGCTAAACGTCATAAGGAGCATCCGGAATTAACCTACCGTTTTGAACTGTTTATTTACGGACGAGAAAT
GGCCAATGCCTTCTCCGAGCTTAATGACCCTATAGACCAAAAGGGCCGGTTCCTGGCTCAGGTAGAAAAGCGTGAGGCCG
GAGATGACGAGGCTCAGATGTATGATGAAGATTTCGTACAAGCTCTGGAGTATGGTATGCCACCGGCCGGCGGCCTGGGT
ATCGGTATTGACCGTTTAGTCATGTTGTTGACTAACTCTTCTTCTATTAGAGACGTTATTTTGTTCCCGTTAATGAGGCC
GAGGGATTAA

Protein sequence : 
MADMQEKKQVQPAPPEAEAGQNNVEDLNELMKVRREKLNELISQGIDPYGQKFERTHLTADIINNFAAMEGQAVVIAGRI
MAKRVMGKASFANLQDSAGNIQIYARLDDLGAEEYSRFEKLDIGDIIGCSGKVFKTRKGEITVHIEKYTMLAKSLRPLPE
KWHGLKDVDLRYRQRYVDLIVNPEVKQTFVIRSRIVRAIRNYLDQRGFLEVETPMMHPIAGGASARPFITHHNALDMNLY
MRIAPELYLKRLLVGGFDKVYEINRNFRNEGISTKHNPEFTSLELYQAYGDYHDMMDLTEDLISHVAREVLGTTTVEYEG
VEISLAKPWRRVPMLEIVKEHSGLDFTQLKDDQAAYDAAKGLGLEIEPGAKWGDILNTVFEEMVEEKLIQPTFVIDYPVE
ISPLAKRHKEHPELTYRFELFIYGREMANAFSELNDPIDQKGRFLAQVEKREAGDDEAQMYDEDFVQALEYGMPPAGGLG
IGIDRLVMLLTNSSSIRDVILFPLMRPRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 7e-128 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desca_0169 YP_004495985.1 Lysyl-tRNA synthetase VFG1668 Protein 4e-128 53