Gene Information

Name : Desca_0010 (Desca_0010)
Accession : YP_004495827.1
Strain : Desulfotomaculum carboxydivorans CO-1-SRB
Genome accession: NC_015565
Putative virulence/resistance : Unknown
Product : pyridoxal biosynthesis lyase pdxS
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 17608 - 18492 bp
Length : 885 bp
Strand : +
Note : TIGRFAM: Vitamin B6 biosynthesis protein; HAMAP: Vitamin B6 biosynthesis protein; KEGG: drm:Dred_0617 pyridoxal biosynthesis lyase PdxS; PFAM: Vitamin B6 biosynthesis protein

DNA sequence :
GTGGTCGAAAAGGGTACATGGACTGTTAAGAAAGGCCTGGCAGAAATGCTTAAAGGCGGCGTAATTATGGATGTTACCAC
TCCGGAACAGGCTAAAATTGCTGAAGAGGCTGGAGCCTGTGCTGTAATGGCTCTGGAGAGGGTTCCGGCTGATATAAGAG
CTGCCGGTGGGGTGGCCAGAATGGCTGACCCTAACGTTATTCTTCGGATTATGGACGCTGTGACCATTCCGGTAATGGCC
AAGGCTCGTATTGGTCATTTTGTAGAGGCACAAATACTTGAAGCCCTGGGAGTAGATTACATAGATGAAAGTGAAGTGCT
TACTCCGGCAGATGAGCTTTTCCATATTGACAAGCACCAATTTAAGGTGCCCTTTGTATGCGGCTGCCGGAACCTTGGTG
AAGCCCTGCGCCGTATTGGCGAAGGTGCGGCCATGATTCGTACCAAGGGGGAACCCGGCACCGGTAATGTGGTAGAGGCA
GTGAGACACATGAGACAAGTGATGAGTGAGATCCGCATGGTGAAAAATATGCCCAAGGACGAGCTGATGACTGCGGCAAA
GGAAATGGGGGCCCCCTATGACCTTGTTTTACAAGTACATGAATTAGGCCGGCTGCCGGTGGTTAACTTTGCGGCCGGTG
GCATTGCCACACCGGCTGATGCTGCTTTAATGATGCAACTAGGCTGTGACGGTATATTTGTTGGTTCCGGTATCTTCAAG
TCTAAGGATCCGGCGGCCAGAGCCAAAGCCATTGTAGCTGCCACCACCCATTATAATGATCCGCAAGTTTTAGCTGAGAT
TTCCAAAGACCTGGGTGAAGCTATGCCTGGTATTGAGATTTCTACCATTGCCGCAGAACAACGGATGCAGGAAAGAGGAT
GGTAA

Protein sequence :
MVEKGTWTVKKGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMADPNVILRIMDAVTIPVMA
KARIGHFVEAQILEALGVDYIDESEVLTPADELFHIDKHQFKVPFVCGCRNLGEALRRIGEGAAMIRTKGEPGTGNVVEA
VRHMRQVMSEIRMVKNMPKDELMTAAKEMGAPYDLVLQVHELGRLPVVNFAAGGIATPADAALMMQLGCDGIFVGSGIFK
SKDPAARAKAIVAATTHYNDPQVLAEISKDLGEAMPGIEISTIAAEQRMQERGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 1e-86 70
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 1e-86 70
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 2e-86 70