Gene Information

Name : AS9A_3123 (AS9A_3123)
Accession : YP_004494368.1
Strain : Amycolicicoccus subflavus DQS3-9A1
Genome accession: NC_015564
Putative virulence/resistance : Virulence
Product : putative iron-siderophore ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3192469 - 3193329 bp
Length : 861 bp
Strand : +
Note : -

DNA sequence : 
ATGACACCGACGAATGGGATCACCGCGTCGCAGCCCCGTTCCCGGCTGCACGCTGAATCGATCACCCTGAGCTACGGCGA
CCGGATCGTCATCGAGGACTTGAACCTCGCGATCCCGACCGGCGGTATCACGACGATCATTGGCCCCAACGGCTGCGGCA
AGTCGACACTCCTGCGCGCACTGGGCCGTTTGCTGAAACCCCGCGAAGGGTCCGTCATCCTCGACGGGAAGCTCATCACG
TCGATGCGGACAAAAGAGGTAGCGCGTGTCCTCGGCATGCTCCCCCAAGCCCCTATCGCTCCTGAAGGCCTGACAGTTGC
CGATCTGGTTTCTCGTGGAAGGCACCCACACCAGTCATGGCTGCGCCAATGGTCAGGAGACGATGAGCAGGAGGTGTCAG
CTGCGCTCGAACTGACCGGTATCGCAGACCTCGCGGACCGGCCGATCAACGAGCTTTCCGGCGGGCAGCGCCAGCGTGTC
TGGATATCCATGGCGCTGGCCCAGGGCACGGACATTCTGCTGCTCGATGAGCCCACGACCTACCTTGACCTTTCTCATGC
CGTCGACGTACTCGACCTGATCGATCAGTTGCACGACGGCATGGGGCGAACGGTCGTCATGGTCCTGCACGACCTCAACC
TCGCGATTCGTTACAGCGATCATCTGGTCGTGATGAAAAACGGAAAGATCATCACGCAGGGCACACCACGCAACGTGATC
ACCGCGGATCTCCTCGAAGAAGCGTTCGGGCTGCGCGCCACCGTAATCGACGACCCCGCATCAGACGCACCTCTCGTCGT
CCCCATCGGCACACGCCATGTGCACTCCAACCTCCTTCCGGTGACAAATATCACGCCCTGA

Protein sequence : 
MTPTNGITASQPRSRLHAESITLSYGDRIVIEDLNLAIPTGGITTIIGPNGCGKSTLLRALGRLLKPREGSVILDGKLIT
SMRTKEVARVLGMLPQAPIAPEGLTVADLVSRGRHPHQSWLRQWSGDDEQEVSAALELTGIADLADRPINELSGGQRQRV
WISMALAQGTDILLLDEPTTYLDLSHAVDVLDLIDQLHDGMGRTVVMVLHDLNLAIRYSDHLVVMKNGKIITQGTPRNVI
TADLLEEAFGLRATVIDDPASDAPLVVPIGTRHVHSNLLPVTNITP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-73 59
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-54 50
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-63 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-63 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-62 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-62 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-63 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-63 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-54 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-52 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-52 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-52 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AS9A_3123 YP_004494368.1 putative iron-siderophore ABC transporter ATP-binding protein BAC0164 Protein 3e-54 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AS9A_3123 YP_004494368.1 putative iron-siderophore ABC transporter ATP-binding protein VFG0925 Protein 1e-66 52
AS9A_3123 YP_004494368.1 putative iron-siderophore ABC transporter ATP-binding protein VFG1042 Protein 3e-54 50