Gene Information

Name : DelCs14_4633 (DelCs14_4633)
Accession : YP_004489964.1
Strain : Delftia sp. Cs1-4
Genome accession: NC_015563
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5228957 - 5230303 bp
Length : 1347 bp
Strand : +
Note : KEGG: dac:Daci_2057 fis family two component sigma-54-specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction re

DNA sequence : 
ATGGCCCGCATCCTGATCGTTGACGATGACACGGCCTTCCGCGAAAGCCTGGCCGAGATGCTGGGCGACCTGGGCCACGC
GGTCAGCGCGGCGCCCACGGTGGCGGCGGGGCTGCAGGTGCTGCAGGCCGGTTCGGTGGATGTGGCCATCGTCGACCTGC
GCATGCCCGGCGAGGACGGGCTGGCCTTCCTGCGCAAGGCCCGCGGCCTCTCGCGGGCGCCCTGCATCATGCTCACGGCC
TACGCCAGCGGCGGCAACACCATCGAGGCCATGCGCCTGGGCGCCTTCGACCACCTGACCAAGCCCATTGCCAGAACCTC
GCTGGTCGAGGTGCTGGAGCGCGCCTTGCTCAGTGCGGGCCAGGCCGGCAGCCCCGAGAACGCCGCACAGAATCCGGCGC
AGAACCCGGAGCAGGAAGGCGATGAAGCCGAGCTGGTCAGCGGCAGCGAGGCCATGCGGCAGGTCTTCAAGCGCATCGGC
CTGGCGGCGGACAGCGACGCCACCGTGCTGGTGCTGGGCGAGACCGGCACGGGCAAGGAACTGGTGGCCCGAGCCCTGCA
CCGCAACAGCGCCCGGGCGGAGCGCCCCTTCGTGGCCGTCAACTGCGCGGCCATTCCGGCAGACCTGATGGAAAGCGAAC
TCTTCGGCCATGTGAAGGGCGCCTTCACGGGCGCTGTCAGCGACCGCGCCGGGCGCTTTCGCGAGGCGCAGGGCGGCACG
CTGTTCCTCGATGAAGTGGGCGACATGCCGCTGCCCACGCAGGCCAAGATCCTCCGGGCGCTGCAGGAGCGCGAGATCAC
GCCCGTGGGCGCCAGCCGGGCGCTGCCCGTGAACGTGCGCATCATCGCGGCCACGCACCGCGACCTGCCGGACGCCGTCA
GGCAGGGGCGCTTTCGCGAGGATCTCTGGTACCGGCTCCAGGTCGTGCCCGTGCACCTGCCGCCGCTGCGCGAGCGCCTG
GGCGACGTGCTGCTGCTGGCCGAGCATTTCCTGCGCCAAGGCGGCGGCGCCTCGCCCAAGCGCCTGGGTGCCGACGCCGC
GCGCCTGCTGCTGGCCCACGACTGGCCCGGCAATGTGCGCGAGCTGCGCAACGCCATGGAGCGCGCGGCCCTGCTGTGCC
CCGGGCCGGTCATCGGGGCCGAGCACATCGGCCTGCAGCCTGCCGCGGCGCACGGGCCCGCCATCGACTGGAACGGCCCG
CTGGCCGCCGCCGTCGCCCAGCTGGAGCGCGAAATGGTCACGCGTGCCCTGGCCGCCGCCACGGGCAACCGTGCCGAGGC
CGCGCGCCGCCTGGGACTGTCGCGCCAGCAGCTGTACCGCAAGCTGGCGGAGTTCGGGCTGGGCTGA

Protein sequence : 
MARILIVDDDTAFRESLAEMLGDLGHAVSAAPTVAAGLQVLQAGSVDVAIVDLRMPGEDGLAFLRKARGLSRAPCIMLTA
YASGGNTIEAMRLGAFDHLTKPIARTSLVEVLERALLSAGQAGSPENAAQNPAQNPEQEGDEAELVSGSEAMRQVFKRIG
LAADSDATVLVLGETGTGKELVARALHRNSARAERPFVAVNCAAIPADLMESELFGHVKGAFTGAVSDRAGRFREAQGGT
LFLDEVGDMPLPTQAKILRALQEREITPVGASRALPVNVRIIAATHRDLPDAVRQGRFREDLWYRLQVVPVHLPPLRERL
GDVLLLAEHFLRQGGGASPKRLGADAARLLLAHDWPGNVRELRNAMERAALLCPGPVIGAEHIGLQPAAAHGPAIDWNGP
LAAAVAQLEREMVTRALAAATGNRAEAARRLGLSRQQLYRKLAEFGLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-63 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-63 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_4633 YP_004489964.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0467 Protein 1e-72 43
DelCs14_4633 YP_004489964.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 3e-70 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_4633 YP_004489964.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1249 Protein 9e-64 43
DelCs14_4633 YP_004489964.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1214 Protein 2e-67 41