|
Name : DelCs14_4412 (DelCs14_4412) Accession : YP_004489746.1 Strain : Delftia sp. Cs1-4 Genome accession: NC_015563 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein mutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 4979117 - 4981768 bp Length : 2652 bp Strand : + Note : KEGG: dac:Daci_2274 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch DNA sequence : ATGAGCGAAGATATTGAAGTGAATCAGGCACTTAGCGAAATACCTTTGGCGTCACATACGCCAATGATGCAGCAGTACCT GGGCATCAAGATCAACTACCCCGACACGCTGGTTTTCTACCGCATGGGGGATTTCTACGAGCTGTTCTTCGGGGATGCGG AGAAGGTGGCGCGGCTGCTGGACATTACGCTGACCACGCGCGGGCAGACGGCGGGGCAGCCGATTCCCATGGCGGGCGTG CCCTTCCATGCGCTGGAGAACTACCTGGGCCGGCTGATCAAGCTGGGCGAGTCGGTGGCGATCTGCGAGCAGGTGGGCGA GGTGGGCGCAGCCAAGGGCCCGGTGGAGCGCAAGGTGGTGCGCGTGGTGACGCCGGGCACGCTGACCGACAGTGAGCTGC TGTCTGACAAGAGCGAGGCGATCTTGCTGTCCCTGCACACGGCCGGGCGCCAGCGCTGCGGCCTGGCCTGGATGGCGGTG ACGCAGGGGCGCATCCATCTGGCCGAGTGTTCCCACGATGAGCTGGGCGCCTGGATTTCACGCATTGCGCCCAGCGAGCT GATCTACAGCGCAGGCGTGACCGAGCGCTTCGAGCAGAGCCTGTTCGCGCTGCGCCATGGCGGCTCCATTGCCTGCCCGC TGTCGCCGCGCCCTGACTGGCAGTTCGACGGCGGTCTGGGCGAGCGCAAGCTGCTGGAGCTGCTGGGCGCCGCCAGCCTC AAGGCCTGGGAGGCCGAGGACCTGCCGCTGGCCCATGGCGCCAGCGCTGCGCTGCTGTCGTATGCGGAGCACACGCAGGG CCGCAGCCTGTCGCACATCCACGCTCTGCAGGTGCAGCGCGACGATGAGCTGATTGCGCTGCCGCTGGCCACGCGCCGCA ACCTGGAGCTGGTCAAGACGCTGCGCGGCGAGGATTCGCCCACATTGTTCTCTCTGCTGGACACCTGCATGACGGGCATG GGCAGCCGCCTGCTCAAGGCCTGGCTGCTGGAGCCGCGACGCGACCGCACGCAGGCCATGGCGCGGCTGGAGGCCACGCG GGCGCTGCAGGGCGCCAGCGCAGGCGGCATGGCCGCGCCCTGGCAGCAGTTGCGCGAGCAGCTCAAGGGCGTGAGCGATG TGGAGCGCATCACCGCGCGCACCGCGCTGCGCCAGGTGCGCCCGCGCGAGCTGGTGGGACTGGGCCGCACGCTGCACAAG GCCGCCCTGCTGGCCCAGGCCGGGCAGACGCCCTCGGCCCACCTGACCCAGCTGTTTGCCGACCTGCAGCCGCCCGAGGG CTGCGCCGAGCTGCTGGTGCGCGCCATCATGGAAGAGCCGGCCGCCCTGGTGCGCGACGGCGGCGTGTTTGCCACGGGCT ACGACGCCGAGCTGGACGAGCTGCGCGCCATCCAGAACAACTGCGATGACTTCCTGCTGGAGCTGGAGGCCAAGGAAAAG CTGCTGACCGGCATTCCCAACCTGCGCGTGCAGTTCAACAAGGTGCACGGCTTCTATATAGAGATCACCAACAGCTACAA GGACGCGGTGCCCGAGCGCTACCGCCGCCGCCAGACGCTGAAGAACGCCGAGCGCTACATCACGCCCGAGCTCAAGGCCT TCGAGGACAAGGCCCTGTCCGCGCAGGAGCGCGCGCTGCAGCGCGAGAAATTCCTCTACGAGCAGTTGCTGGACCAGTTG CAGCCCCACGTGCCGGCGCTCACGCGCGTGGCCGGAGCCATTGCCGCCATCGACGTGCTGTGCACGCTGGCCGAGCGCTC GCTGACGCTGAACTGGTGCGCGCCCGAGTTCGTGAACCATCCCTGCATCGAGATCGAGGCCGGCCGCCACCCCGTGGTGG AGGCCCGCATGGCCGAGACCTCCAGCGGCAGCTTCATCGCCAACCACACGCGCATGAACGCCAACACGCGCATGCAGATC ATCACCGGCCCCAACATGGGCGGCAAGTCGACCTATATGCGCCAGGTGGCGCTGATCGTGCTGCTGGCGAGCATGGGCTC GCATGTGCCGGCGTCCAGCTGCCGGCTGGGGCCCATCGATGCCATCCACACGCGCATTGGCGCGGCCGACGACCTGGCCA ATGCCCAGTCCACCTTCATGATGGAGATGACCGAGGCCGCGCAGATCCTGCACTCAGCCACGCCGCACAGCCTGGTGCTG ATGGACGAGATCGGCCGGGGCACCAGCACCTTCGACGGCCTGGCGCTGGCCAGCGGTATCGCCACCCAGCTGCACGACAG GACGCGCGCCTTCACGCTGTTTGCCACGCACTACTTCGAGCTGACCGAGCTGCCGGCCAAGGCACGCGCGGCCGTGAACA TGCATGTGAGCGCGGCGGAGTCGGGCCAGGACATCGTCTTCCTGCACGAGATCCAGCCCGGCCCGGCCAGCCGCAGCTAC GGTATCCAGGTGGCCAAGCTGGCGGGCATGCCGGCCGGCGTGCTGCACCACGCGCGCCATGCGCTGGAGGCACTGGAGGC CCATGCCGACGAGGGCCGCCTGCAGGTGGACCTGTTCGATGCGCCCGACATGCCCGAGCCCGAAAGCCGCCACGACCCGC TGGCCCAGGCGCTGGCCGCCATCAATCCCGACGCACTGAGCCCGCGCGAGGCGCTGGAAGCCCTTTACCAGCTCAAGAAG ATCGCCGCCTGA Protein sequence : MSEDIEVNQALSEIPLASHTPMMQQYLGIKINYPDTLVFYRMGDFYELFFGDAEKVARLLDITLTTRGQTAGQPIPMAGV PFHALENYLGRLIKLGESVAICEQVGEVGAAKGPVERKVVRVVTPGTLTDSELLSDKSEAILLSLHTAGRQRCGLAWMAV TQGRIHLAECSHDELGAWISRIAPSELIYSAGVTERFEQSLFALRHGGSIACPLSPRPDWQFDGGLGERKLLELLGAASL KAWEAEDLPLAHGASAALLSYAEHTQGRSLSHIHALQVQRDDELIALPLATRRNLELVKTLRGEDSPTLFSLLDTCMTGM GSRLLKAWLLEPRRDRTQAMARLEATRALQGASAGGMAAPWQQLREQLKGVSDVERITARTALRQVRPRELVGLGRTLHK AALLAQAGQTPSAHLTQLFADLQPPEGCAELLVRAIMEEPAALVRDGGVFATGYDAELDELRAIQNNCDDFLLELEAKEK LLTGIPNLRVQFNKVHGFYIEITNSYKDAVPERYRRRQTLKNAERYITPELKAFEDKALSAQERALQREKFLYEQLLDQL QPHVPALTRVAGAIAAIDVLCTLAERSLTLNWCAPEFVNHPCIEIEAGRHPVVEARMAETSSGSFIANHTRMNANTRMQI ITGPNMGGKSTYMRQVALIVLLASMGSHVPASSCRLGPIDAIHTRIGAADDLANAQSTFMMEMTEAAQILHSATPHSLVL MDEIGRGTSTFDGLALASGIATQLHDRTRAFTLFATHYFELTELPAKARAAVNMHVSAAESGQDIVFLHEIQPGPASRSY GIQVAKLAGMPAGVLHHARHALEALEAHADEGRLQVDLFDAPDMPEPESRHDPLAQALAAINPDALSPREALEALYQLKK IAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 3e-158 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DelCs14_4412 | YP_004489746.1 | DNA mismatch repair protein mutS | VFG0562 | Protein | 1e-171 | 47 |
