Gene Information

Name : DelCs14_2965 (DelCs14_2965)
Accession : YP_004488327.1
Strain : Delftia sp. Cs1-4
Genome accession: NC_015563
Putative virulence/resistance : Virulence
Product : type VI secretion lipoprotein
Function : -
COG functional category : S : Function unknown
COG ID : COG3519
EC number : -
Position : 3343975 - 3345849 bp
Length : 1875 bp
Strand : -
Note : KEGG: dac:Daci_3859 type VI secretion protein; TIGRFAM: Type VI secretion system, VCA0110; PFAM: Type VI secretion system, VCA0110

DNA sequence :
ATGAATCCCCGCCTCGTCGAGTACTACAACCGCGAACTGGCCTATCTGCGCGAGCTGGGCGCCGAGTTCGCCGCCGCCTT
CCCCAAGGTGGCGGGCCGCCTTTCCCTGCACGACACCGATGTGGCCGACCCCTATGTGGAGCGCCTGCTGGAAGGCTTCA
GCTTTCTGAGCGCGCGCATCCAGCTGAAGATGGATGCGGAGTTTCCGCGCCTGTCCCAGCGCATGATGGAAATGGTCTGC
CCCCACTACCTGGCGCCCACGCCATCCATGGTGGTGGTCCAGCTCAAGCCCAGCGCCAAGGAAGGCAACCTCGTGGACGG
CTTCACCCTGCCCTCTGGCAGCGTGCTGCGCACCCACAAGTCACAGGAAGAGCAGACCATCTGCGAATTCCGCACCGGCG
GGCCGCTGACGCTGTGGCCGCTGGAGATACGCCAGGCGCGCCTGGGCGGCCCGGCGCTGGACCTGCCCCATGCGCTGGTG
CCCCAGCTGGGCGAGGCCGGCGGCCACCTGCGCCTGCAGCTGGCCACGCTGGACGCCTCGCAGTGCATGCAGCTGGCGAT
GGACCAGCTGTGGGTCTACATCCATGCGGGCGATGTCGTCGCCTCCCACCTGCAGGAGCTCATCCACACGCAGACGCTGG
CCATCGTGGTCCACCACCCGCAGGACCCGCGCCAGGTCTGGGACGTGCTGCAGCCCGATGCACTGCGCGCCGAAGGCCAT
GACAGCGAGCAGGCGCTGATTCCCTATTCGCACCGCGCCTTCCAGGGCCACCGTCTGCTGCACGAGTACTTTGCGTTTCC
CGCACGGCAGCGGTTCTTCTCGATCAACGGCCTGTCGCGCAGCATGCGCCGCATTGCCCATGACGGCGTGGGCATCACCG
TGCTGCTGCGCCGCGCCGCGCCCACGCTGGAGCCGCAGATCGACGCGGCCAAGCTGCTGATGCACTGCATTCCGGCCATC
AACCTGTTCGAGTACACGGCGGACCGCCTGCATGTGGCCTCCAACGTGCACGAGTACCACGTCATCCCCGACCGCACGCG
GCCGCTGGACTTCGAGGTCTACGGCGTGCAGGCAGTCACCGGCCACCACGAAGGCAAGACCCAGGACCGCGAATTCGCGC
CGCTGTACGCATCCACGCACGGCCTGCACTCCACCGAGCAGGCCTACTTCACCACGCGGCGCGAGCCCCGGCTGTTTTCC
GAGCGCAGCCTGCGCAGCGGCCCGCGCACGCAGTACCTGGGCTCGGAAGTCTTCATCTCCCTGGTGGACCAGCGCGAGGC
CCCGTTCTCCGACGACCTCAAGCAGCTGTCCATGCACACCCTGTGCACCAACCGCGACCTGCCCCTGCTCATGCGCGTCA
ACCAGCCGGGCGGCGACTTTGCGCTGCAGGAATCGGCGCCCGTGGAATGGGCCCGCGCCATCGCCGGCCCCAGCGCGCCC
ATCCCCGCCGTGGCCGACGGAGGCCTGACCTGGCGATTGATCTCCCACCTGAGCCTGAACTACCTGGCCATGACCGATCT
GTCCGACGAGGAAGGCGCGGCCACGCTGCAGGAGCTGCTGCGCCTGTACCTGGACCTGGGCAACCACCAGCTGGCCGGGC
AGATCGCCGCCATCCAGGGCATGCGCATCGAACCCATCACGCGCCGCCTGCCCCAGCACCGCCAGCTGGTCTACGGCCGC
GGCGTGGGCGTACACCTGAGCGTGGACGAGCCGGCCATGGCCGGCGTCAGCCCCTGGCCCCTGTCGAATGTGCTGGAGCG
ATTCTTCGCCCGCCATGTGGGCGTCAACAGCTTCACCGAGCTGCAGCTGCACTCGCGCCAGCGCGGCCCCGTCGCGCGCT
GGACTCCGCGCCCCGGACAAAGGCCCGGCATATGA

Protein sequence :
MNPRLVEYYNRELAYLRELGAEFAAAFPKVAGRLSLHDTDVADPYVERLLEGFSFLSARIQLKMDAEFPRLSQRMMEMVC
PHYLAPTPSMVVVQLKPSAKEGNLVDGFTLPSGSVLRTHKSQEEQTICEFRTGGPLTLWPLEIRQARLGGPALDLPHALV
PQLGEAGGHLRLQLATLDASQCMQLAMDQLWVYIHAGDVVASHLQELIHTQTLAIVVHHPQDPRQVWDVLQPDALRAEGH
DSEQALIPYSHRAFQGHRLLHEYFAFPARQRFFSINGLSRSMRRIAHDGVGITVLLRRAAPTLEPQIDAAKLLMHCIPAI
NLFEYTADRLHVASNVHEYHVIPDRTRPLDFEVYGVQAVTGHHEGKTQDREFAPLYASTHGLHSTEQAYFTTRREPRLFS
ERSLRSGPRTQYLGSEVFISLVDQREAPFSDDLKQLSMHTLCTNRDLPLLMRVNQPGGDFALQESAPVEWARAIAGPSAP
IPAVADGGLTWRLISHLSLNYLAMTDLSDEEGAATLQELLRLYLDLGNHQLAGQIAAIQGMRIEPITRRLPQHRQLVYGR
GVGVHLSVDEPAMAGVSPWPLSNVLERFFARHVGVNSFTELQLHSRQRGPVARWTPRPGQRPGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0289 NP_454871.1 hypothetical protein Not tested SPI-6 Protein 1e-126 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_2965 YP_004488327.1 type VI secretion lipoprotein VFG2074 Protein 5e-140 48