Gene Information

Name : DelCs14_2438 (DelCs14_2438)
Accession : YP_004487807.1
Strain : Delftia sp. Cs1-4
Genome accession: NC_015563
Putative virulence/resistance : Resistance
Product : arsenical pump membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1055
EC number : -
Position : 2780812 - 2782098 bp
Length : 1287 bp
Strand : +
Note : KEGG: dac:Daci_4380 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein

DNA sequence :
ATGCTTGCGGCCCTCCTGATCTTTGCAGCCACCCTTGTCCTGGTCATCTGGCAGCCCGCAGGCCTGGGCATCGGCTGGAG
CGCGTCGCTCGGCGCCATCGTGGCACTGGCCCTGGGGGTGGTGCACTGGGCCGATGTCGCCGTCGTCTGGGGCATCGTCT
GGAACGCAACGGCCACCTTCGTGGCGGTCATCATCATCAGCCTGCTGCTGGACGAGGCCGGGTTCTTCGCTTGGGCTGCA
CTGCACGTGGCCCGCTGGGGCCGCGCAAGCGGCAGGCGCCTGTTTGCCTTCATCGTGCTGCTGGGCGCCGTGGTGTCTGC
GGTCTTTGCCAACGATGGCGCCGCGCTCATCCTGACGCCCATCGTGATGGCCATGCTGGTGGCCCTGGGCTTTTCTGCCG
CAAGCACCCTGGCCTTCGTCATGGCGGCAGGGTTCATCGCGGACACGGCCAGCCTGCCGCTGGTGGTGTCCAACCTGGTC
AACATCGTCTCGGCGGACTTCTTCGGCATCGGCTTCAACGACTATGCATCGGTCATGGTGCCGGTGAACCTGGTTGCCGT
GGCCGCCAGCCTGGGCGTGCTGTTCCTGTTCTTCCGCAAGGATCTGCCCCGCACCTACGCCTTGGAGCGCCTGCAGCAGC
CATCGGCCGCCATCCGGGACCTGGCCACCTTCCGCGCAGGCTGGGTCGTGCTGGCGCTGTTGATGCTGGGCTTCTTCGGG
CTGGAGCCGCTGGGCGTTCCCGTCAGCGCGGTGGCCGCAGCCTGTGCGCTGCTCTTGCTGGCCGTCGCCGCCCATGGCCG
GGTCATCAGCGCAGGCCGGGTCCTGAAGGGCGCGCCATGGCAGATCGTCGTGTTCTCGCTGGGCATGTACCTGGTGGTCT
ATGGCCTGCGCAACGCGGGGCTGACCGGTGCCCTGGCCAAGGTGCTGGAAGTGTTTGCGGGCGGCGGCGTGTGGGGCGCC
GCAATAGGCACCGGCTTTCTGTCGGCGGGCCTGTCTTCCGTGATGAACAACATGCCCACGGTGCTGGTGGGCGCCCTGTC
CATCGAGCACTCCGGGGCCACGGGGCTGGTGAAGGAAGCCATGGTCTATGCCAATGTGATCGGCTGTGACCTCGGCCCCA
AGATCACGCCCATCGGCAGCCTGGCCACCTTGCTCTGGCTCCATGTGCTGGCCCGCAAGGGCATGACGATTGCCTGGGGC
TACTACCTGCGCGTCGGCATCGTCCTGACCCTTCCGGTCCTTGCCATCACGCTTGTCGCGCTTGCCCTGCGGCTGAGTGT
GGGCTGA

Protein sequence :
MLAALLIFAATLVLVIWQPAGLGIGWSASLGAIVALALGVVHWADVAVVWGIVWNATATFVAVIIISLLLDEAGFFAWAA
LHVARWGRASGRRLFAFIVLLGAVVSAVFANDGAALILTPIVMAMLVALGFSAASTLAFVMAAGFIADTASLPLVVSNLV
NIVSADFFGIGFNDYASVMVPVNLVAVAASLGVLFLFFRKDLPRTYALERLQQPSAAIRDLATFRAGWVVLALLMLGFFG
LEPLGVPVSAVAAACALLLLAVAAHGRVISAGRVLKGAPWQIVVFSLGMYLVVYGLRNAGLTGALAKVLEVFAGGGVWGA
AIGTGFLSAGLSSVMNNMPTVLVGALSIEHSGATGLVKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLARKGMTIAWG
YYLRVGIVLTLPVLAITLVALALRLSVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 2e-135 74
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 2e-100 56
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 6e-97 55
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 5e-100 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_2438 YP_004487807.1 arsenical pump membrane protein BAC0576 Protein 5e-135 75
DelCs14_2438 YP_004487807.1 arsenical pump membrane protein BAC0578 Protein 4e-134 75
DelCs14_2438 YP_004487807.1 arsenical pump membrane protein BAC0031 Protein 1e-129 74
DelCs14_2438 YP_004487807.1 arsenical pump membrane protein BAC0577 Protein 4e-131 73
DelCs14_2438 YP_004487807.1 arsenical pump membrane protein BAC0574 Protein 1e-100 56
DelCs14_2438 YP_004487807.1 arsenical pump membrane protein BAC0575 Protein 2e-101 56