Gene Information

Name : DelCs14_1408 (DelCs14_1408)
Accession : YP_004486795.1
Strain : Delftia sp. Cs1-4
Genome accession: NC_015563
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1590667 - 1593279 bp
Length : 2613 bp
Strand : +
Note : TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dac:Daci_5207 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core

DNA sequence :
ATGCGAATCGACAAACTGACAACCAAGTTCCAGGAAGCCCTGGCCGACGCGCAAACGCTGGCCCTGGGCGGAGACCAATC
CAATATCGAACCCCTGCACCTGCTCGTGGCGCTGCTGCGCCAGGACGATGGTCCGCGCTCGCTCTTGCAGCGCGCCGGCG
CCAACGTGGGCCAGCTGCAGGCCGCAGCCGAGAAGGCCCTGGCCGATCTGCCGCGCGTGCAGCACCAGGACCAGGTGCAG
GTCGGCTCCGAGCTGGGCCGGCTGCTGCAGGCGACCGAGAAGGAAGCCCTCAAGCGCGGCGACCAGTTCATTGCCAGTGA
GCTGTTCCTGCTGGCGCTGACCGACAGCAGCGGCTCTTCCACGCGCGCAGGCCAACTGCTCAAGGAAAGCGGCGTGACGC
GCTCCAGCCTGGAGTCGGCCATCAACGCCGTGCGCGGCGGCCAGACCATGGACAGCGCCGAAGGCGAAGGCCAGCGCGAG
GCCCTCAAGAAATACACCATGGACCTGACCGAGCGCGCGCGCATCGGCAAGCTCGATCCGGTGATCGGCCGCGACGACGA
AATCCGCCGCTCCATCCAGGTGCTGCAGCGCCGCAGCAAGAACAACCCCGTGCTCATCGGCGAGCCCGGCGTGGGCAAGA
CCGCCATTGTCGAGGGCCTGGCCCAGCGCATCGTGGCCGGCGAGGTGCCCGAAAGCCTCAAGAACAAGCGCGTGTTGTCG
CTGGACATGGCGGGCCTGCTGGCCGGCGCCAAATACCGTGGCGACTTCGAGGAACGCCTGAAGTCCGTGCTCAAGGAAGT
GGCCCAGGAAGAGGGCCGCATCATCCTGTTCATCGACGAGATCCACACCATGGTCGGTGCCGGCAAGGCCGATGGCGCCA
TGGACGCGGGCAACATGCTCAAGCCGGCCCTGGCGCGCGGCGAGCTGCACTGCATCGGCGCGACCACGCTCGATGAATAC
CGCAAGTACATCGAAAAGGATGCGGCGCTGGAGCGGCGCTTCCAGAAGGTGCTGGTCGAAGAGCCTTCCGTGGAGGACAC
CATCGCCATCCTGCGCGGTCTGCAGGTGCGCTACGAGGCCCACCACGGCGTGGATATCACCGACCCGGCCATCGTGGCTG
CGGCCGAGCTGAGCCACCGCTACATCACCGACCGCTTCCTGCCCGACAAGGCCATCGATCTGATCGACGAGGCCGCGGCC
AAGATCAAGATCGAGATCGACTCCAAGCCCGAGGTCATGGACAAGCTCGAGCGCCGCATGATCCAGCTCAAGATCGAGCG
CGAGGCCATGAAGAAGGAAAAGGACGAGGCCTCGCAAAAGCGCCTGCAGCTGATCGAGGAAGAACTCGGCAGCCTGGAGC
GCGAGTACGCCGACCTGGAAGAGGTCTGGAAGAGCGAGAAGGCCAGCGCCCAGGGCTCCGAGCAGATCCGCAAGGAGATC
GACCAGATCCGCATCCAGATCGAGGAGCTCAAGCGCAAGGGCGACTTCAACAAGGTGGCCGAGCTGCAGTACGGCAAGCT
GCCCTCGCTGGAAAAGCAACTCAACGAAGCCCAGGCCAACGAGCAGGGGCAGGGCGGCGCCCCCGCCCACAGGCTGCTGC
GCACCCATGTCGGCGCCGAGGAAATTGCCGAAGTGGTCAGCCGTGCCACGGGCATTCCCGTGGCCAAGATGATGCAGGGC
GAGAAGGACAAGCTGCTGCGCATGGAAGACCGGCTGCATGACCGCGTCGTCGGCCAGGACGAGGCCATCTCGGCCGTGGC
CAATGCCATTCGCCGCTCGCGCTCGGGTCTGTCCGACCCCAACCGGCCCACGGGCTCCTTCCTGTTCCTGGGCCCCACGG
GCGTGGGCAAGACCGAGCTGTGCAAGGCGCTGGCCGGCTTCCTGTTCGACAGCGAGGACCATCTGGTGCGCATCGACATG
AGCGAGTTCATGGAAAAGCATTCCGTGGCCCGCCTGATTGGCGCGCCGCCCGGCTACGTGGGCTACGAGGAAGGCGGTTA
CCTGACCGAGGCCGTGCGCCGCAAGCCCTACAGCGTGTTGCTGCTCGATGAGGTCGAAAAGGCCCATCCCGACGTGTTCA
ACGTGCTGCTGCAGGTGCTGGACGATGGTCGCCTGACCGATGGCCAGGGCCGCACCGTGGACTTCAAGAACACGGTCATC
GTGATGACGAGCAACATAGGCTCTTTGCTGATCCAGGCCATGGTCGGCGAGGATTACGATGATGTGAAAGATGCGGTCTG
GGGGGAACTCAAGAACCATTTCCGACCCGAATTCCTTAACCGCATCGACGAAACCGTGGTCTTCCACGCGCTCGACGCGA
AGAATATCGAGTCGATCGCAAGGATTCAGCTCAAGCTGCTGGAGCGTCGTTTGGAGAAAATGGACCTTGCGCTGCAGGTG
TCCGACCAGGCACTGGCCGAACTGGCCAAGGTGGGCTTCGATCCCGTTTTCGGGGCCCGGCCGCTCAAGCGCGCGATACA
GCAGCGGATCGAGAATCCGCTGTCGAAACTGCTGCTCGAAGGGCGCTTTCCGCCCAAGAGCACGATTGCGGTACATGTGG
ACCCGGTACTGGAGCCGGGCGTATTCCGGTTCGATGCGGCAGACCCCGCCTGA

Protein sequence :
MRIDKLTTKFQEALADAQTLALGGDQSNIEPLHLLVALLRQDDGPRSLLQRAGANVGQLQAAAEKALADLPRVQHQDQVQ
VGSELGRLLQATEKEALKRGDQFIASELFLLALTDSSGSSTRAGQLLKESGVTRSSLESAINAVRGGQTMDSAEGEGQRE
ALKKYTMDLTERARIGKLDPVIGRDDEIRRSIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVAGEVPESLKNKRVLS
LDMAGLLAGAKYRGDFEERLKSVLKEVAQEEGRIILFIDEIHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEY
RKYIEKDAALERRFQKVLVEEPSVEDTIAILRGLQVRYEAHHGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAA
KIKIEIDSKPEVMDKLERRMIQLKIEREAMKKEKDEASQKRLQLIEEELGSLEREYADLEEVWKSEKASAQGSEQIRKEI
DQIRIQIEELKRKGDFNKVAELQYGKLPSLEKQLNEAQANEQGQGGAPAHRLLRTHVGAEEIAEVVSRATGIPVAKMMQG
EKDKLLRMEDRLHDRVVGQDEAISAVANAIRRSRSGLSDPNRPTGSFLFLGPTGVGKTELCKALAGFLFDSEDHLVRIDM
SEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVLLLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVI
VMTSNIGSLLIQAMVGEDYDDVKDAVWGELKNHFRPEFLNRIDETVVFHALDAKNIESIARIQLKLLERRLEKMDLALQV
SDQALAELAKVGFDPVFGARPLKRAIQQRIENPLSKLLLEGRFPPKSTIAVHVDPVLEPGVFRFDAADPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 7e-96 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_1408 YP_004486795.1 ATP-dependent chaperone ClpB VFG2076 Protein 2e-102 44