Gene Information

Name : DelCs14_1367 (DelCs14_1367)
Accession : YP_004486754.1
Strain : Delftia sp. Cs1-4
Genome accession: NC_015563
Putative virulence/resistance : Virulence
Product : Lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : 6.1.1.6
Position : 1550065 - 1551624 bp
Length : 1560 bp
Strand : -
Note : PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: dac:Daci_5248 lysyl-tRNA synthetase

DNA sequence : 
ATGACCGAACACAACACCCCATCCGCAGCGGACCAGACCGCTCCCCAGGACGAAAACCAACTCATCGCCGAGCGCCGCGA
AAAACTCAAGGCCCTGCGCGAACAGGTCCGTGAACAGGGCGGCGTGGCATTCCCCAACGACTTCAAGCCCGCCGACCGCG
CCGAGGCGCTGCAGCAGGCCCATGCCGACAAGAGCGCCGAGCAGTTGGACGCCGAAGCCGTTCAGGTCAGCCTGGGCGGC
CGCATGATGCTCAAGCGCGTCATGGGCAAGGCCAGCTTTGCCACCATCCAGGACGGATCGCTGGGCCCCACGCACGGTCG
CATCCAGCTGTACATCACGCGCGACACCGTGGGCGAGGAGGTCTATGCGGCCTTCAAGCGCTGGGACCTGGGCGACATCC
TGGGCGCCGAGGGCACGCTGATGAAGACCAAGACCGGCGAGCTGTCGGTCAAGGTGCAGACGCTGCGCCTGCTCACCAAG
AGCCTGCGCCCCATGCCCGACAAGTTCCACGGCATGGCCGACCTGGAGCAGAAGGTGCGCCAGCGCTATGTGGACCTGAT
GATGGACGAGCAGGCCCGCCGCCGCTTCATCGCACGCAGCAAGGCCGTCTCGGGCATCCGCGAATTCATGGTGGAGCACG
GCTTCCTGGAAGTGGAAACGCCCATGCTGCACCCCATTCCCGGCGGCGCCAACGCCAAGCCCTTCGTCACCCACCACAAC
GCGCTGGACCAGGAGATGTACCTGCGCATCGCGCCCGAGCTGTACCTCAAGCGCCTGGTGGTCGGCGGCTTCGAGCGCGT
TTTCGAGATCAACCGCAACTTCCGCAACGAAGGCATCTCGGTTCGCCACAACCCCGAGTTCACCATGATGGAGTTCTACG
CGGCCTACTGGAACTACCGCGACCTGATGGACTACACCGAGGCCCTGGTGCGCGACGCCGCGCAAAAGGCCGTGGGCACG
CTGCAGCTGACCTACGGCGGCAAGCCCGTGGACCTGTCCCAGCCCTTCCAGCGCCTGACCATTCCCGAGGCCATCGTCAA
GTTCACCGAGGCCGGTGACAAGGTGGCCGACCGCGAATGGCTGACCAATGCGCTGCGCAAGCTGGGCATGACGGAAGAAA
AGGACCGCCTGTCCGCCCGCACCCTGGCCAGCCTGCAGGTGCTGTACTTCGAGGAAGTGGTGGAAGAAAAGCTCTGGCAG
CCCACCTTCATCATGGAGCACCCCACCGAGATCTCGCCGCTGGCACGCGCCAATGACGAGCGCCCCGAGGTCACCGAGCG
CTTCGAGCTGTACATCACGGGCCGCGAATTCGGCAACGGATTCTCCGAGCTCAACGACGCCGAGGACCAGGCCGCGCGCT
TCAATGCCCAGGTCCAGGCCAAGGACGGTGGCGACGACGAAGCCATGTACTTCGACCACGACTTCGTGCGTGCCCTCGAG
TACGGCATGCCCCCCACGGGCGGCTGCGGCATCGGCATCGACCGCCTGATGATGCTGCTGACCGACAGCGCCAGCATCCG
CGACGTGATCCTGTTCCCTGCCCTGCGCCGCGAACAGTAA

Protein sequence : 
MTEHNTPSAADQTAPQDENQLIAERREKLKALREQVREQGGVAFPNDFKPADRAEALQQAHADKSAEQLDAEAVQVSLGG
RMMLKRVMGKASFATIQDGSLGPTHGRIQLYITRDTVGEEVYAAFKRWDLGDILGAEGTLMKTKTGELSVKVQTLRLLTK
SLRPMPDKFHGMADLEQKVRQRYVDLMMDEQARRRFIARSKAVSGIREFMVEHGFLEVETPMLHPIPGGANAKPFVTHHN
ALDQEMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMEFYAAYWNYRDLMDYTEALVRDAAQKAVGT
LQLTYGGKPVDLSQPFQRLTIPEAIVKFTEAGDKVADREWLTNALRKLGMTEEKDRLSARTLASLQVLYFEEVVEEKLWQ
PTFIMEHPTEISPLARANDERPEVTERFELYITGREFGNGFSELNDAEDQAARFNAQVQAKDGGDDEAMYFDHDFVRALE
YGMPPTGGCGIGIDRLMMLLTDSASIRDVILFPALRREQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 7e-132 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DelCs14_1367 YP_004486754.1 Lysyl-tRNA synthetase VFG1668 Protein 4e-132 54