Gene Information

Name : Metig_1047 (Metig_1047)
Accession : YP_004484653.1
Strain : Methanotorris igneus Kol 5
Genome accession: NC_015562
Putative virulence/resistance : Unknown
Product : pyridoxal biosynthesis lyase pdxS
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 1042808 - 1043707 bp
Length : 900 bp
Strand : +
Note : TIGRFAM: Vitamin B6 biosynthesis protein; HAMAP: Vitamin B6 biosynthesis protein; KEGG: mae:Maeo_1316 pyridoxal biosynthesis lyase PdxS; PFAM: Vitamin B6 biosynthesis protein; Indole-3-glycerol phosphate synthase

DNA sequence :
ATGAAAAAGGTAGGAACCGATTTGTTAAAGAAGGGATTTGCTAAGATGGTTAAACATGGAGTAGTTATGGACGTTACAAA
TGTAGAGCAAGCACAAATTGCAGAGGATGCTGGTGCAGTTGCAGTTATGGCTTTGGAAAGAGTCCCAGCAGATATAAGAG
CTCAGGGTGGAGTAGCAAGAATGTCAGACCCTGCATTAATTTTAGAGATAAAAGACGCTGTCTCAATCCCTGTTATGGCA
AAAGTAAGGATAGGGCATTTTGTTGAGGCACAAATCTTAGAGGCAATTGGAGTAGATATGATTGACGAGAGTGAGGTCTT
AACCCCTGCAGATGAGCAACACCACATCGATAAAACAAAATTCAAAGTTCCATTTGTTTGTGGAGCAAGAAATCTTGGAG
AGGCATTGAGAAGAATAGAAGAAGGAGCAGCAATGATTAGAACAAAAGGAGAAGCAGGAACTGGAAACGTTGTTGAGGCA
GTAAGGCATATGAGAGCAGTTAATGAAGGAATTGCAAGAGTTGTTGGATACTATGAGATGGGATTGGACAGAGAGTTATT
ATACATGGCAAGAAATGAACTTAAAGTTCCAGTTGAATTAGTTTATGAGGTTGCAAAATTAAGAAGATTGCCTGTTGTTA
ACTTTGCTGCTGGTGGAATTGCAACACCTGCTGACGCTGCTTTAATGATGCAACTTGGTGCTGATGGTGTATTTGTTGGT
TCAGGAATCTTCAAATCAGAAAACCCAGAAGAGAGAGCAAGAGCAATTGTTGAGGCAGTTTATAACTACGACAAACCAGA
TGTTATTGCAGAAATCAGTAAGAACCTTGGAGAACCAATGAGAGGCATTGATATATCAAAATTGAGTGAAGGAGAGATGT
TACAGTATAGAGGAGATTAA

Protein sequence :
MKKVGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEDAGAVAVMALERVPADIRAQGGVARMSDPALILEIKDAVSIPVMA
KVRIGHFVEAQILEAIGVDMIDESEVLTPADEQHHIDKTKFKVPFVCGARNLGEALRRIEEGAAMIRTKGEAGTGNVVEA
VRHMRAVNEGIARVVGYYEMGLDRELLYMARNELKVPVELVYEVAKLRRLPVVNFAAGGIATPADAALMMQLGADGVFVG
SGIFKSENPEERARAIVEAVYNYDKPDVIAEISKNLGEPMRGIDISKLSEGEMLQYRGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 3e-76 66
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 4e-76 66
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 4e-76 65