Gene Information

Name : Psefu_0061 (Psefu_0061)
Accession : YP_004472142.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 65210 - 66553 bp
Length : 1344 bp
Strand : +
Note : KEGG: pmy:Pmen_4561 two component, sigma54 specific, fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction r

DNA sequence : 
ATGGCAGGTCAGGTAATCGTCGTCGACGACGAAGCAGCGATCCGTGAGGCGGCGCAGCAGTGGCTGGAGCTGTCCGGCTT
CAGCGTGCAGACCTGCGCCACGGCAACTCAGGCGCTGGCGCTGCTCGACGCCGACTTTCCCGGCGTGCTGATCAGCGATG
TGCGCATGCCCGGCACTGATGGCCTGCAGCTGCTGGAGCGGGTAGTTGAGCTCGACCGCGACCTGCCGGTGATCATGATC
ACCGGCCATGGCGACGTGCCGATGGCCGTGCAGGCGCTCAAGCAGGGTGCCTATGATTTCATCGAGAAACCCTTCACCCC
GGACCGCCTGCTCGATACCGTGCGCCGGGCCCTGGAAAAGCGCCGGCTGATCTGCGAGAACCGCGCACTGCGCCAGCAGT
TCGCCCTCAAGGACGGCATCGCCGCGCAACTGCTCGGCGTGTCGCGGCCCATGGAGCGGCTGCGCCGGCAGATTCTCGAC
CTGGCCGGCACTTCGGTGAACGTGCTGATCCGCGGCGAGACCGGCTCGGGCAAGGAGCGCGTGGCGCGCTGCCTGCACGA
CTTCAGCGAGCGCGCCGACAAGCCCTTCGTGGCGCTCAACTGCGCGGCGATTCCCGAGCACCTGTTCGAGAGCGAACTGT
TCGGCCATGAGAGCGGCGCTTTCACCGGCGCGCAGAACAAGCGTATCGGTCGTATCGAACATGCCCATGGCGGCACGCTG
TTTCTCGACGAGGTGGAAAGCCTGCCGCTGGCCCAGCAGGTCAAGCTGCTGCGCGTGCTGCAGGAAAAGACCCTGGAGCG
GCTGGGTTCCAACCGCAGCATTCAGGTCGACCTGCGGGTAATCAGCGCGGTGAAGCCGGACCTGCTCGATGAGGTCAAAG
CCGGGCGTTTCCGTGAGGATCTGTTCTACCGCCTGAACGTCGCCACCCTGCATATACCGGCACTGCGCGAGCGTCGCGAA
GATATCTCGCTGCTGTTCGAACACTTCGCCGAAGAGGCTGCCCAGCGTCATGGCCGCACCCTCGAGCCGCTGACGCCCGC
CGAGCTGGCGGCGCTGCTCGGCCACGAATGGCCGGGCAACGTGCGCGAGCTGATCAACGCCGCCGAGCGCCATGCCCTGG
GGCTTGGCGATAACGATGCGCAGGAAGGCAACCAGTCCCTGGCCGGGCAGATGGAAGCCTTCGAGGCGCAGTGCCTGCAC
AACGCGTTGCTGCGTTGTCGCGGCAGCATTTTGCAGACCATGGAGTTGCTGCAACTGCCACGCCGAACTCTCAACGAAAA
GATGCAGCGCCATGGCTTGCAGCGCAGTGCCTACCGGCCGGCGGGCAGTAACGACGAGGATTGA

Protein sequence : 
MAGQVIVVDDEAAIREAAQQWLELSGFSVQTCATATQALALLDADFPGVLISDVRMPGTDGLQLLERVVELDRDLPVIMI
TGHGDVPMAVQALKQGAYDFIEKPFTPDRLLDTVRRALEKRRLICENRALRQQFALKDGIAAQLLGVSRPMERLRRQILD
LAGTSVNVLIRGETGSGKERVARCLHDFSERADKPFVALNCAAIPEHLFESELFGHESGAFTGAQNKRIGRIEHAHGGTL
FLDEVESLPLAQQVKLLRVLQEKTLERLGSNRSIQVDLRVISAVKPDLLDEVKAGRFREDLFYRLNVATLHIPALRERRE
DISLLFEHFAEEAAQRHGRTLEPLTPAELAALLGHEWPGNVRELINAAERHALGLGDNDAQEGNQSLAGQMEAFEAQCLH
NALLRCRGSILQTMELLQLPRRTLNEKMQRHGLQRSAYRPAGSNDED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-53 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-53 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_0061 YP_004472142.1 Fis family transcriptional regulator BAC0089 Protein 2e-64 47
Psefu_0061 YP_004472142.1 Fis family transcriptional regulator BAC0467 Protein 2e-62 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_0061 YP_004472142.1 Fis family transcriptional regulator VFG1214 Protein 4e-57 44
Psefu_0061 YP_004472142.1 Fis family transcriptional regulator VFG1249 Protein 6e-55 43
Psefu_0061 YP_004472142.1 Fis family transcriptional regulator VFG0116 Protein 2e-49 42