Gene Information

Name : Psefu_3819 (Psefu_3819)
Accession : YP_004475869.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4122397 - 4123734 bp
Length : 1338 bp
Strand : +
Note : KEGG: pmy:Pmen_0965 two-component response regulator PilR; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver doma

DNA sequence : 
ATGAATCGCCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAACTGCTGGAGATCACCCTCGGGCGCATGAA
ACTCGACACCCGCAGCGCCCGCAACGTCAAGGAAGCGCGTGAGTGGCTGGCCAAGGAGCCGTTTGATCTGTGCCTGACCG
ACATGCGCATGCCCGACGGCACCGGGCTCGACGTCGTGCAACATATCCAGCAGCGCTACCCGCAAACGCCAGTGGCGATG
ATCACCGCATTCGGCAGCATGGATACCGCGATCAACGCCCTCAAGGCCGGCGCCTTCGATTTTCTGACCAAACCGGTCGA
CCTCGGCCGCCTGCGCGAGCTGGTCGATACGGCGCTGCGCCTGCATAGCCCTGACGATGAAGAAGCCCCTGGCGCCAGTC
GACTACTGGGCGAATCGCCGCCCATGCGCGCCCTGCGCGCACAGATCCAGAAACTCGCCCGCAGCCAGGCGCCGGTGTAC
ATCAGTGGCGAATCGGGCAGCGGCAAGGAGCTGGTCGCCCGTCTGATCCACGAACAGGGCCCGCGCCGCGAACGCGCCTT
CGTGCCGGTCAACTGCGGCGCGATTCCCTCGGAGCTGATGGAAAGCGAATTCTTCGGTCACAAAAAAGGCAGCTTCACCG
GTGCCGTCGAAGACAAACAGGGCCTGTTCCAGGCTGCCAATGGTGGCAGCCTGTTTCTCGACGAAGTGGCCGACCTGCCG
CTGACCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAGGCCGTCCGCGCCGTCGGCGGCCAGCAGGAAGTGGTGGT
CGATACGCGCATCCTGTGCGCCACCCACAAGGACCTCGCCGCCGAAGTAGCAGCCGGCCGCTTCCGCCAGGATCTCTACT
ACCGCCTCAACGTCATCGAACTGCGCGTACCGCCACTGCGCGAACGCCGCGAGGACATTCCCCTGCTGGCCGACGTGATG
CTCAAGCGCCTCAACGAAGGCATCGGCCTGCCGCCAGTCAAGCTCGACGGCCCGGCGCTGGAAAAGCTCAAGAGCTACCG
CTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTGGAGCGCGCCTACACGCTGTGCGAAGGCGACGTGATCTGCGCCA
ACGACCTGCGCCTCGCCGACGCCGCACCAGCTGGCGAGAACGGCGACGCCAGCCTGGCACAGATCGACAACATCGAGGAT
TACCTCGAAGACGTCGAACGCAAACTGATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCCGCCCAACG
CCTGGGCCTGAGCTTCCGCTCGATGCGCTATCGCCTGAAAAAGCTCGGCATCGACTGA

Protein sequence : 
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRMPDGTGLDVVQHIQQRYPQTPVAM
ITAFGSMDTAINALKAGAFDFLTKPVDLGRLRELVDTALRLHSPDDEEAPGASRLLGESPPMRALRAQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRRERAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGSLFLDEVADLP
LTMQVKLLRAIQEKAVRAVGGQQEVVVDTRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADVM
LKRLNEGIGLPPVKLDGPALEKLKSYRFPGNVRELENMLERAYTLCEGDVICANDLRLADAAPAGENGDASLAQIDNIED
YLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-99 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-99 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_3819 YP_004475869.1 Fis family transcriptional regulator BAC0089 Protein 1e-72 44
Psefu_3819 YP_004475869.1 Fis family transcriptional regulator BAC0467 Protein 2e-72 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_3819 YP_004475869.1 Fis family transcriptional regulator VFG1214 Protein 4e-179 87
Psefu_3819 YP_004475869.1 Fis family transcriptional regulator VFG0116 Protein 2e-54 42