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Name : Psefu_3770 (Psefu_3770) Accession : YP_004475821.1 Strain : Pseudomonas fulva 12-X Genome accession: NC_015556 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 4065145 - 4067094 bp Length : 1950 bp Strand : - Note : SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: pst:PSPTO_2478 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain DNA sequence : ATGCGTCTGTTTCTCTGCGAAAAGCCCTCCCAAGCCAAAGACATCGCCAGCGTGCTTGGTGCCACGCGGCGTGGCGACGG CTGCTGGCTGGGCAACGGCGTGACGGTCACCTGGTGCATCGGCCATTTGCTCGAAACCGCGCCACCGGATGCCTACGACG CGCGCTACAAGCGCTGGGTGCTGGACGACCTGCCCATCGTCCCGCAGCAGTGGAAAATGCGCGTCAAAGCCAATACCGCC GCTCAGTTCAAGGCCATCAAGCGCCTGCTTGGCGAGGCCAGCGAGCTGGTGATCGCCACCGACGCGGATCGCGAGGGCGA GATGATCGCTCGCGAGTTGCTCGAGCATTGCCGCTACCGCGGGCCGATCCAGCGTTTGTGGCTGTCGGCGCTGGACGACG CCTCGATCCGCAAGGCCCTGGCGGCGCTCAAACCGGGCGCCAGCACCTACAACCTCTATCAGTCGGCGCTCGGTCGCTCG CGGGCCGACTGGCTGATCGGCATGAACATGAGCCGCCTGTTCACCCTGCTGGGGCGCAAGTCCGGTTATCAGGGCGTGCT GCCGGTCGGCCGCGTGCAGACGCCGACCCTGCGCCTGGTGGTCGACCGCGACCGCAGCATCGCCGACTTCGTGCCGGTGC CGTTCTGGGCCATCGACGTGACGCTCGACGGCAATGGCATTCCGTTTACCGCCGTGTGGCGCGCGCCCCAGGACGATTGC GACGAGCAGGGCCGCTGCCTGAAGCAGGAAGTGGCGCAGCGCGCCGCCGAGGCCATGCAGGGCGCCGAGCATGCCGTGCT GGAGAAGTTGAAGACCGAGCGCATGCGTGAGGCGCCGCCGTTGCTGTTCGACCTCGGTACGCTGCAGCAGGTGTGCTCGA AGAAGCTCGGCCTGGGCGCCCAGGAAACCCTGGACATCGCCCAGAAACTCTACGAGACAGACAAGCTGATCACCTATCCG CGCAGCGATTGCGGTTACCTGCCGCTCAGCCAGCACGCCGAGGCACCGGCCATTTTAGCCGCGCTGGGGCAGGCCGATCC GACATTGCGTGAAGTGCTGGCGCATACCCAGACGCAGCGCCGCTCGCGGGCCTGGAACGATGCCAAGGTCAGCGCCCACC ACGGCATCATCCCGACCCTGGCGGCTGGAGGGCTGACTCGACTGAGCGGCCGGCCGCGTGCGGTTTATGAACTGATCCGT GCCCGCTATCTGGCGCAGTTTCTGCCCAACCACGAATACGATCGCACCCAGGCCGACTTCGACTGCGCCGGCCATGACCT GCGTGCGGTCGGCAAACAGATCGTCGAGCCGGGCTGGAAACGCGCGCTGCCCGAAGCCCTGGCTCCGAGCAAGGGCCGTG AGGCGCCTGCGCCCCAGGCCTTGCCCGCACTGCATGAAGGCCAGACGTGCGCGGTGCGTGAAGTGACGCTCAAGGATCAA TTCACTCAGCCGCCCAAGCCGTTCACCGAGGGCGACCTAATCCAGGCCATGAAGAACGTCGCGCGGCTGGTCGAGGACCC GCTTCTGAAGCAGAAGCTCAAGGACACCACTGGCATCGGCACCGAAGCCACCCGCGCCGGCATCATCCAGGGCCTGCTCG ACCGCGGTTACCTGACCAAGCAGGGCAAGACCCTGGCCGCCACCTCGGCAGCCTTCGGCCTGATCGATGCGGTGCCCCGC GCTATCGCCGACCCCGGCACCACGGCGATCTGGGAGCAGGCGCTGGATATGGTGCAGAGCGGCGAGATGCCCCTGGACGA ATTCGTTGCCAAGCAATCTGCTTGGATGGCCAGGCAGATCGAGCGCTGCCGTGGCCTGCAACTGACCATCAGCGGCCCGC CGCCGGGTGGCAGGCCGGCTTGGAAGGGCAAGCGAAAAGGCGCCTCGCGCAAGAAGGCTGCATCGGCCAAGCGTGCAGGT GCTAGCGCCGCAGGGGGCAGATCTAAGTAG Protein sequence : MRLFLCEKPSQAKDIASVLGATRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDARYKRWVLDDLPIVPQQWKMRVKANTA AQFKAIKRLLGEASELVIATDADREGEMIARELLEHCRYRGPIQRLWLSALDDASIRKALAALKPGASTYNLYQSALGRS RADWLIGMNMSRLFTLLGRKSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPFWAIDVTLDGNGIPFTAVWRAPQDDC DEQGRCLKQEVAQRAAEAMQGAEHAVLEKLKTERMREAPPLLFDLGTLQQVCSKKLGLGAQETLDIAQKLYETDKLITYP RSDCGYLPLSQHAEAPAILAALGQADPTLREVLAHTQTQRRSRAWNDAKVSAHHGIIPTLAAGGLTRLSGRPRAVYELIR ARYLAQFLPNHEYDRTQADFDCAGHDLRAVGKQIVEPGWKRALPEALAPSKGREAPAPQALPALHEGQTCAVREVTLKDQ FTQPPKPFTEGDLIQAMKNVARLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLTKQGKTLAATSAAFGLIDAVPR AIADPGTTAIWEQALDMVQSGEMPLDEFVAKQSAWMARQIERCRGLQLTISGPPPGGRPAWKGKRKGASRKKAASAKRAG ASAAGGRSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 63 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 61 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 61 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 3e-155 | 52 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-155 | 52 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-155 | 52 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 9e-152 | 51 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-145 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 9e-114 | 43 |
