Gene Information

Name : Psefu_3483 (Psefu_3483)
Accession : YP_004475539.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3746852 - 3747517 bp
Length : 666 bp
Strand : -
Note : KEGG: psp:PSPPH_3453 DNA-binding response regulator QseB, PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transductio

DNA sequence : 
GTGCGTGTCCTGCTGGTTGAAGATGATCGTGCCCTGGCGCGCGGGATCCGCGTGGCCCTGCGCGGCGAAGGCTATACGCT
GGACTGGCTGGAGGATGGCGTCGAAGCCGCCCATGCGCTGCGCAGCGAAAAGTTCGACCTGGTGCTGCTCGACCTCGGCC
TGCCGCGCCTGGATGGCATGACCCTGCTGCGTCAGCTGCGCGCACGCAGCGAGAACGCCGTGCCGGTGCTGGTGCTCACC
GCCCGCGATGCCATGGATGATCGCATTCAGGGCCTGGATGCCGGCGCCGACGACTATCTGGTCAAACCCTTCGACCCCGA
GGAACTGAAAGCGCGCATCCGCGCCTTGCTGCGGCGCAGCCAGGGCCGTGCCCAGCCGGTGCTGGAGTTCGCCGGCGTGA
CCCTCGACCCGTCCACCCAGGAGGTGCGTTACCAGGGGCGCAGCGTGCCGATGACGCCCATGGAATATCAGCTGCTGCAC
CAGTTGCTGATTCGCCCCGGCGTGGTGGTCACCCGCGAGCGCCTGGCCAGTGCCCTGTACGGCTGGCAGGAGAGCGGCCC
GGGCAACACGCTGGAGGTGCTGATCCACAACCTTCGCCGCAAACTGTGCAGCGAGTTGATCCGTACCGTGCGCGGGGTCG
GATATCTGGTGGAGCAGACATCGTGA

Protein sequence : 
MRVLLVEDDRALARGIRVALRGEGYTLDWLEDGVEAAHALRSEKFDLVLLDLGLPRLDGMTLLRQLRARSENAVPVLVLT
ARDAMDDRIQGLDAGADDYLVKPFDPEELKARIRALLRRSQGRAQPVLEFAGVTLDPSTQEVRYQGRSVPMTPMEYQLLH
QLLIRPGVVVTRERLASALYGWQESGPGNTLEVLIHNLRRKLCSELIRTVRGVGYLVEQTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-32 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_3483 YP_004475539.1 two component transcriptional regulator, winged helix family BAC0487 Protein 1e-34 46
Psefu_3483 YP_004475539.1 two component transcriptional regulator, winged helix family BAC0197 Protein 2e-29 42
Psefu_3483 YP_004475539.1 two component transcriptional regulator, winged helix family NC_002516.2.879194.p Protein 6e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psefu_3483 YP_004475539.1 two component transcriptional regulator, winged helix family VFG0473 Protein 9e-39 47
Psefu_3483 YP_004475539.1 two component transcriptional regulator, winged helix family VFG1390 Protein 2e-33 45
Psefu_3483 YP_004475539.1 two component transcriptional regulator, winged helix family VFG0596 Protein 2e-24 41