Gene Information

Name : Psefu_0250 (Psefu_0250)
Accession : YP_004472328.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : type VI secretion system effector
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 283155 - 283643 bp
Length : 489 bp
Strand : -
Note : KEGG: pag:PLES_00861 hypothetical protein; TIGRFAM: Type VI secretion system effector, Hcp1; PFAM: Virulence factor, secretion apparatus

DNA sequence :

ATGGCTGTTGATATGTTCATCAAGATTGGCGACGTCAAGGGTGAGTCCAAGGACAAGGCCCACGCTGACGAAATCGACGT
ACTGGCCTGGAGCTGGGGCATGAGCCAGTCCGGCTCCATGCACGTCGGCGGTGGCGGCGGTGCCGGCAAGGTCAATATCC
AGGATCTGTCGCTGACCAAGTACGTCGACAAGTCCAGCCCCAACCTGATGATGGCCTGCTCCAGCGGCAAGCATTATCCG
GAAGCCAAGCTGACCGTCCGCAAGGCCGGCGGCGACTCACAGGTCGAGTACCTGATCATCACCCTGAAGGAAGTGCTGGT
GTCGTCCATCAGCACCGGCGGCAGCGGTGGCGAAGATCGCCTGACCGAGAACGTCACCCTGAACTTCGCTCAGGTGCTGG
TCGACTACCAGCCGCAGAAAGCCGACGGCGCCAAAGACGGCGGCCCGGTCAAATACGGCTGGAACATCCGCCAGAACGTC
AAGGTGTAA

Protein sequence :

MAVDMFIKIGDVKGESKDKAHADEIDVLAWSWGMSQSGSMHVGGGGGAGKVNIQDLSLTKYVDKSSPNLMMACSSGKHYP
EAKLTVRKAGGDSQVEYLIITLKEVLVSSISTGGSGGEDRLTENVTLNFAQVLVDYQPQKADGAKDGGPVKYGWNIRQNV
KV

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	1e-23	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Psefu_0250	YP_004472328.1	type VI secretion system effector	VFG2071	Protein	2e-53	92