Gene Information

Name : Psefu_1935 (Psefu_1935)
Accession : YP_004474002.1
Strain : Pseudomonas fulva 12-X
Genome accession: NC_015556
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2067337 - 2068122 bp
Length : 786 bp
Strand : +
Note : KEGG: pmy:Pmen_2812 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein

DNA sequence :

ATGTTGCGACTTCTGCTTGTGCTGGTGTTCGCGCTAGGGGCTTCGCTGGCCTTCGCTCAGGAACCGCCATCGCCCAGCCC
ATTGATCCAGCAGGGCAGCAATCCGCTGTCTATTCCGGCGATCACCTTGAGCACCGACGCCGAAGGGCAGCAGGAATACT
CGGTCAGTCTGCAGATCCTGCTGATCATGACGGCGCTGAGCTTCATTCCGGCGTTCCTCATGCTGATGACCAGCTTCACG
CGGATCATCATCGTGTTTTCGATTCTGCGTCAGGCTCTCGGTTTGCAGCAGACACCGTCCAACCAGATCCTCATCGGCCT
GGCGCTGTTTCTGACCATGTTCATCATGGCGCCGGTGTTCGACCAGATTAACCGCGAAGCCCTGCAGCCTTATCTGAATC
AGCAGCTGCCGGCGCAGCAGGCCATCGAGCGCGCCGAGGTGCCGATCAAGAACTTCATGCTGGCGCAAACCCGTGAGAGC
GATCTGGAGCTGTTCGTGCGCCTGTCCAAGCGCACCGACATCGCCACGCCGGAAGCGGCGCCGCTGACCATCCTGGTGCC
GGCCTTCGTGACCTCGGAGCTCAAGACCGCATTCCAGATCGGCTTCATGATCTTCATTCCGTTTCTGATCATCGACATGG
TGGTGGCCAGTATCCTCATGGCCATGGGCATGATGATGCTGTCGCCACTGATCATTTCCCTGCCGTTCAAGATCATGCTG
TTCGTGCTGATCGACGGCTGGGCGCTGATCATGGGCACCCTGGCCAGCAGTTTCGGCACGTTATAG

Protein sequence :

MLRLLLVLVFALGASLAFAQEPPSPSPLIQQGSNPLSIPAITLSTDAEGQQEYSVSLQILLIMTALSFIPAFLMLMTSFT
RIIIVFSILRQALGLQQTPSNQILIGLALFLTMFIMAPVFDQINREALQPYLNQQLPAQQAIERAEVPIKNFMLAQTRES
DLELFVRLSKRTDIATPEAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFKIML
FVLIDGWALIMGTLASSFGTL

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	2e-32	42
ssaR	NP_460384.1	type III secretion system protein	Virulence	SPI-2	Protein	5e-33	41
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	1e-29	41
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	1e-29	41
ssaR	CAA68199.1	secretion system apparatus, SsaR	Virulence	SPI-2	Protein	4e-33	41
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	1e-29	41
yscR	NP_456109.1	putative type III secretion protein	Virulence	SPI-2	Protein	2e-32	41
yscR	NP_805090.1	type III secretion system protein	Virulence	SPI-2	Protein	2e-32	41
ssaR	YP_216427.1	type III secretion system protein	Virulence	SPI-2	Protein	5e-33	41
lscR	AAO18040.1	LscR	Virulence	TTSS locus	Protein	9e-33	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	5e-32	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	7e-32	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	5e-32	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	7e-32	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	6e-32	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	6e-32	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	5e-32	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	5e-32	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	5e-32	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	5e-32	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	2e-31	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Psefu_1935	YP_004474002.1	flagellar biosynthetic protein FliP	VFG1259	Protein	1e-93	85
Psefu_1935	YP_004474002.1	flagellar biosynthetic protein FliP	VFG2494	Protein	2e-65	60
Psefu_1935	YP_004474002.1	flagellar biosynthetic protein FliP	VFG2016	Protein	8e-68	59
Psefu_1935	YP_004474002.1	flagellar biosynthetic protein FliP	VFG2338	Protein	1e-60	57
Psefu_1935	YP_004474002.1	flagellar biosynthetic protein FliP	VFG0394	Protein	5e-33	42
Psefu_1935	YP_004474002.1	flagellar biosynthetic protein FliP	VFG0188	Protein	5e-34	42
Psefu_1935	YP_004474002.1	flagellar biosynthetic protein FliP	VFG0519	Protein	2e-33	41
Psefu_1935	YP_004474002.1	flagellar biosynthetic protein FliP	VFG0827	Protein	3e-32	41