Gene Information

Name : Thexy_2328 (Thexy_2328)
Accession : YP_004472000.1
Strain : Thermoanaerobacterium xylanolyticum LX-11
Genome accession: NC_015555
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 2440728 - 2441207 bp
Length : 480 bp
Strand : -
Note : TIGRFAM: ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: ttm:Tthe_2678 protein of unknown function DUF163; PFAM: SPOUT methyltransferase, predicted

DNA sequence :
TTGAATATAGACGTAATTGCAGTTGGAAAGATAAAAGAGAGATTTATAGAAGATGGAATACAGGAATACGCCAAAAGATT
GAAGCCATACTGCAATATAAACATAACTGAAGTAAACGATGAAAAAGCCCCTGAAAGCTTAAGCGATAAAGAAAAAGAAG
CCATTATGTTAAAAGAAGGCTCTAAGATCATCGATAAGATCAGAAAAGGAAGCTTTATAATATCCTTATGCATAGAAGGT
AGACAAATGGATTCGGTAGAATTTGCCCGCTATATAGAAGATGTCATGACGGCGGGCAATTCTAATATAACATTTGTGAT
AGGAGGATCATTAGGCTTACACGACGATATAAAATCTATGTCGGATCTAAAGCTATCATTTTCAAAGATGACATTTCCAC
ACCAGCTCATGCGGCTTATATTAGTAGAACAAATTTATAGGGCATTCAAGATAATGAAGGGTGAGACGTATCATAAGTGA

Protein sequence :
MNIDVIAVGKIKERFIEDGIQEYAKRLKPYCNINITEVNDEKAPESLSDKEKEAIMLKEGSKIIDKIRKGSFIISLCIEG
RQMDSVEFARYIEDVMTAGNSNITFVIGGSLGLHDDIKSMSDLKLSFSKMTFPHQLMRLILVEQIYRAFKIMKGETYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 4e-41 55
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 3e-27 55
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 4e-41 55
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 4e-41 55
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 5e-40 55
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 4e-41 55
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 4e-41 55
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 1e-40 55
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 4e-41 55
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 4e-41 55
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-40 55
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 4e-41 55
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 9e-41 55
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 4e-41 55
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-41 55
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 4e-41 55
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 6e-41 55
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 4e-40 53
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 9e-38 52