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Name : ambt_21380 (ambt_21380) Accession : YP_004469569.1 Strain : Alteromonas sp. SN2 Genome accession: NC_015554 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 4790945 - 4792987 bp Length : 2043 bp Strand : + Note : COG1450 Type II secretory pathway, component PulD DNA sequence : ATGAAAAGGCGCACTAGCCAAAAATTGTTATCTCGCCTGAGCACAGCCCTGTGCACGGCCCTTCTTTGTTTCTCGGTAAC CGCCGCTGAATATATGCCTAATTTTAAAGACACTGATATTAGTGAGTTCATTAATATTGTGGGCAAAAACTTAGAGCGGA CCATTATTGTCGACCCCAATGTTCGCGGTAAAATCAGTGTTCGAAGCTACGATATGCTGACTGAAGATCAGTATTATCAA TTCTTTTTAAACGTGCTTCAGGTTTACGACTTTGCTGTGGTTGAAATGCCGAGCGGTATTTTAAAAGTAGTACGCTCTAA AGATGCTAAAACATCAAACATTCCTGTAGTAGAAGGTTCAGCGAAAGACGGTGATGAAATGATCACCCGCGTCGTGCCTG TTTATAACGTACCGGTAAGAGAATTAGCGCCTATTCTACGTCAACTTAACGACCAAGCTGGCGGTGGTAATGTAGTAAGC CACGACCCTTCAAACGTAATGATGATTACTGGCCGCGCGGCTGTGGTGAACCGCTTAGTTGAAATTATTGAGCGTGTTGA CCGTGCAGGTGATGAAGAAGTTGAGATTGTGAAGCTACGTTTCGCCTCAGCCTCTGAAATGGTGCGTATTATCGACAGCA TTAACAAATCACAAGGTAAAGCTAATACCGGTGCTAAGTCAGACCCTCGAGTGGTAGCCGACGACCGTACTAACTCTGTG ATTGTAAGCGGCGACATTAAAGCCCGCCAACGTTTAATTAATCTTATTGAGCGTATGGATCAGGAGTTAGAAACCAGCGG TAATACTCGCGTAATGTTTCTTAACTATGCCAAAGCCGACGATCTAGTAAAAGTACTACAAGGGGTTTCTGCCAGTATTC AAGCAGAAGAGAAAAGTGGCAGCACCAACAGCCGTGGTTCATCTAACCGTGACGTCAGCATTGATGCCCATGAAGATTCT AATGCGTTAGTAATCACTGCGGAACCTGACATGATGCGCTCACTAGAAGAAGTGGTCCGTCAGCTTGATATTCGCCGCGC ACAGGTACAGGTTGAAGCCATTATTGTAGAAGTATTCGAAGGTGACGGCACTACCTTAGGTGTACAGTGGGTGTCTGAAA ATGGCGGTGGTACTCAGTTTAGCAATGGTGTCATCCCAGTAGGATCGTTGGCGGTAGCGCTTAAAGAAGCGGAAGACGAT ACCGATACCGAAGCCTATGTAACTGATGAAGGTGCTGTTGTTAGAGTCACCACTACCGATGAAGGTGATTATACTTCTCT TGCTAGCTTGTTAGGCAGCGCGAATGGCTTAATTGCGGGTATTATTGATAACGGCTGGGGCGCGGTTGTGCAAGCAGTTA GTACCGACACTAACTCTAACGTATTGGCCACACCGCACCTTACGACCATGGACAACGAAGAAGCTTATTTCATTGTAGGG CAAGAAGTACCGATTATTACTGGTACTTCTACAGGCTCGAATAACTCGAACCCGTTCCAAACGGTCGATCGCCAAGAAGT AGGCATTAAGCTTAAAGTCACGCCTCAAATAAATGAAGGCGATGCAGTTCAGTTATTAATTGAACAAGAAGTATCTAGCG TCAGTGGTGCCACCTCGGTAGATATCTCTATTAATAAACGTGAAATTAAAACTACGGTTATTGTAGATGATGGCGGCACG ATTGTATTAGGCGGCTTGATAGACGAAGACGTTCAAGAAAGCGTATCTAAAGTGCCTTTATTAGGCGATATTCCTATTAT TGGTAACTTGTTTAAGTCGACGTCTACCAGCAAACGTAAACGTAACCTAATGGTGTTTTTAAAGCCAACTATCGTTCGTG ATGGCGCAACCATGAACTCTATTAGCCATCGTAAGTACAACTACATTCGTGCCTTACAGCTTAAACGCCAGCAAGATGGT ATTTCACTAATGCCAAACGCTGAAAGCCCTAGTATGCCTAATTGGGATGATGAACTTTCCTTGCCGCCTTCATTTGAAGA ATACCTGACTGAGAAAGACAACCTTGATGAAGGTAACGAGTAA Protein sequence : MKRRTSQKLLSRLSTALCTALLCFSVTAAEYMPNFKDTDISEFINIVGKNLERTIIVDPNVRGKISVRSYDMLTEDQYYQ FFLNVLQVYDFAVVEMPSGILKVVRSKDAKTSNIPVVEGSAKDGDEMITRVVPVYNVPVRELAPILRQLNDQAGGGNVVS HDPSNVMMITGRAAVVNRLVEIIERVDRAGDEEVEIVKLRFASASEMVRIIDSINKSQGKANTGAKSDPRVVADDRTNSV IVSGDIKARQRLINLIERMDQELETSGNTRVMFLNYAKADDLVKVLQGVSASIQAEEKSGSTNSRGSSNRDVSIDAHEDS NALVITAEPDMMRSLEEVVRQLDIRRAQVQVEAIIVEVFEGDGTTLGVQWVSENGGGTQFSNGVIPVGSLAVALKEAEDD TDTEAYVTDEGAVVRVTTTDEGDYTSLASLLGSANGLIAGIIDNGWGAVVQAVSTDTNSNVLATPHLTTMDNEEAYFIVG QEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSSVSGATSVDISINKREIKTTVIVDDGGT IVLGGLIDEDVQESVSKVPLLGDIPIIGNLFKSTSTSKRKRNLMVFLKPTIVRDGATMNSISHRKYNYIRALQLKRQQDG ISLMPNAESPSMPNWDDELSLPPSFEEYLTEKDNLDEGNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 1e-156 | 53 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-149 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ambt_21380 | YP_004469569.1 | general secretion pathway protein D | VFG2047 | Protein | 7e-147 | 52 |
