Gene Information

Name : fliP (ambt_13240)
Accession : YP_004467968.1
Strain : Alteromonas sp. SN2
Genome accession: NC_015554
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2977951 - 2978709 bp
Length : 759 bp
Strand : -
Note : COG1338 Flagellar biosynthesis pathway, component FliP

DNA sequence : 
ATGCGTAAGTTTTGGACCGCATTTTTTGTAGTGTTAGCTTCTTGGGTGATTGCTGAGCCTGCACTGGCACAGCAAGGAAT
TTCAGCCGTGACCGTTGTGACTAATGACGATGGGTCGCAAGATTACACTATGACGTTACAAGCGCTGTTTATCATGACAG
CGCTCAGTCTTATTCCTGCATTCATCATGATGATGACCTCGTTCACCCGCATCATAGTGGTGTTATCAATTTTGCGCCAA
GCGATTGGTTTGCAGCAATCTCCTTCTAACCAAATTTTGGTTGGGGTGAGTTTGTTTTTGTCTATGTTTATTATGGCGCC
GGTGTTTGAAGAAATTAATGAACGCGCATTGCAGCCTTATCTGTCGGAACAAATGACAAGTTTGGATGCCATAGAGCAAG
CTAAAGGGCCTATGCGCGCCTTTATGCTGTCGCAAACCCGAGTGAAAGATTTAGAAACCTTTGTGCGTATTGCTGGTGAT
GAGGGGAAATATGCAGATACAGACGAAGTACCGCTAACTATCCTTATTCCTGCGTTCGTGACCAGCGAGCTAAAAACCGC
GTTCCAAATCGGATTTATGTTGTTTATTCCGTTTCTTATTATCGACCTTGTTGTGGCCTCAATATTGATGGCCATGGGTA
TGATGATGCTGTCGCCCATGATTGTTTCACTGCCATTTAAACTCATGTTGTTTGTGTTAGTTGATGGCTGGAATCTAATA
TTTGGCACACTGGCTACCAGCTTCGGTATGGGTGTGTAG

Protein sequence : 
MRKFWTAFFVVLASWVIAEPALAQQGISAVTVVTNDDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSILRQ
AIGLQQSPSNQILVGVSLFLSMFIMAPVFEEINERALQPYLSEQMTSLDAIEQAKGPMRAFMLSQTRVKDLETFVRIAGD
EGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLI
FGTLATSFGMGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 9e-26 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-27 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 8e-28 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-24 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-24 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-24 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-27 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-23 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-23 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-23 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-23 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-23 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-28 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-24 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-24 42
escR AAL57527.1 EscR Virulence LEE Protein 8e-26 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 8e-26 42
escR CAI43889.1 EscR protein Virulence LEE Protein 8e-26 42
escR AAC31528.1 L0049 Virulence LEE Protein 7e-26 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-25 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 7e-26 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-25 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-25 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-25 42
escR AAK26700.1 EscR Virulence LEE Protein 8e-26 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-25 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-28 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-28 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-23 41
escR AAC38369.1 EscR Virulence LEE Protein 6e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG1259 Protein 8e-68 68
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-56 59
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG2494 Protein 5e-51 53
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG2338 Protein 6e-47 51
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG0044 Protein 3e-27 44
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG0394 Protein 1e-24 44
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG0519 Protein 1e-23 42
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG0827 Protein 4e-26 42
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG0188 Protein 4e-25 41
fliP YP_004467968.1 flagellar biosynthesis protein FliP VFG0715 Protein 3e-25 41