Gene Information

Name : ambt_08560 (ambt_08560)
Accession : YP_004467042.1
Strain : Alteromonas sp. SN2
Genome accession: NC_015554
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1929654 - 1930367 bp
Length : 714 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGACCGACAAAATATTAATTGTTGAAGACGACCAAGATATCGCAAATTTAATGCGGGTTAATCTGTTAGAACTGGGTGT
TGAAATAGAACATCAAACTGACGGAAAAGTAGCACTGGAATGCGCGTTGTCTGATGAATTTGCCATTGTAATTTTGGATG
TGATGCTACCTAGCATGAGCGGCTTAGATATATGCCGCAAGGTGCGAGATGCCTTGCCTATGCAAAGTATTATTATGCTT
ACCTCGAAAACCTCTGAAACCGACAGAGTATTAGGGTTAGAGCTTGGCGCCGACGATTACATGACAAAGCCATTCAGTGT
AAGAGAACTGCAAGCAAGGGTGCGTTCTCAGCTTCGAAAATATCATGTGGTGCAACAAACTCAAACCACGCAACAACAAA
TAGATACACCGTTAAAACTAGGCCGCCTTGTTATCGACCAGCGAAATCATCAGGTATTTTTATCTGAAGAAGAATTGGTA
CTAACCGCCACTGAATTTGAATTGCTTCATCACTTAGCCAGTCACCCTGGGCAAGTGTTTAGTCGCAGCCAATTATTAGA
ATCGGTGTGGGGTTACCATCATAGTGGCTACGAGCATACGGTGAATTCACATATTAACCGGCTGCGTTCGAAGTTAGAAA
ACGACGCCACCGCGCCCCAAATTGTACAAACCGTATGGGGTGTAGGGTACAAATTTAATCCTCAAGGAGTGTAA

Protein sequence : 
MTDKILIVEDDQDIANLMRVNLLELGVEIEHQTDGKVALECALSDEFAIVILDVMLPSMSGLDICRKVRDALPMQSIIML
TSKTSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKYHVVQQTQTTQQQIDTPLKLGRLVIDQRNHQVFLSEEELV
LTATEFELLHHLASHPGQVFSRSQLLESVWGYHHSGYEHTVNSHINRLRSKLENDATAPQIVQTVWGVGYKFNPQGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-48 46
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-48 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_002745.1124361.p0 Protein 2e-45 44
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_009782.5559369.p0 Protein 2e-45 44
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_002951.3237708.p0 Protein 2e-45 44
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_002758.1121668.p0 Protein 2e-45 44
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_009641.5332272.p0 Protein 2e-45 44
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_013450.8614421.p0 Protein 2e-45 44
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_007793.3914279.p0 Protein 2e-45 44
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_012469.1.7685629. Protein 1e-41 44
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_002952.2859905.p0 Protein 3e-45 43
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_007622.3794472.p0 Protein 3e-45 43
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_003923.1003749.p0 Protein 3e-45 43
ambt_08560 YP_004467042.1 two component transcriptional regulator AF155139.2.orf0.gene Protein 1e-39 42
ambt_08560 YP_004467042.1 two component transcriptional regulator HE999704.1.gene2815. Protein 1e-43 42
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_005054.2598277.p0 Protein 2e-41 41
ambt_08560 YP_004467042.1 two component transcriptional regulator NC_014475.1.orf0.gen Protein 2e-41 41
ambt_08560 YP_004467042.1 two component transcriptional regulator AE000516.2.gene3505. Protein 2e-35 41
ambt_08560 YP_004467042.1 two component transcriptional regulator FJ349556.1.orf0.gene Protein 6e-39 41
ambt_08560 YP_004467042.1 two component transcriptional regulator DQ212986.1.gene4.p01 Protein 1e-40 41
ambt_08560 YP_004467042.1 two component transcriptional regulator AM180355.1.gene1830. Protein 4e-42 41
ambt_08560 YP_004467042.1 two component transcriptional regulator CP001918.1.gene5135. Protein 1e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ambt_08560 YP_004467042.1 two component transcriptional regulator VFG1563 Protein 6e-49 46
ambt_08560 YP_004467042.1 two component transcriptional regulator VFG1702 Protein 8e-49 46