Gene Information

Name : TepRe1_2588 (TepRe1_2588)
Accession : YP_004461994.1
Strain : Tepidanaerobacter acetatoxydans Re1
Genome accession: NC_015519
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 2707739 - 2708272 bp
Length : 534 bp
Strand : -
Note : TIGRFAM: Ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: ttm:Tthe_2678 protein of unknown function DUF163; PFAM: SPOUT methyltransferase, predicted

DNA sequence :
TTGGTAGAAGATCCTTTTCAGAGGCTTCCCCTGCAGAAAGTGAAGGATGTGCTAATGAATATAGATATTATTTGCGTAGG
CAAGATAAAAGAAAAATATATATTAGACGGTATAAAAGAATATAAAAAAAGACTTACGCCTTACTGCAAATTGCGCATTA
TCGAAGCTATAGAGCAGAAGGCTCCGGAAAACTTAAGCGAAAAAGAAAAGGCTCAGGTGTTAGAGCGTGAAGGAAATAGC
ATACTTCAAAAACTAAACCCATCATCTTTTGTAGTTGCCCTATGTATCGAGGGCAGAGCGCTTTTTTCCGAAGAAATGGC
TAAAAAGTTAAGCGATCTTATGATAGACGGCAAGTCACATATTACATTTATCATCGGCGGCTCCCTTGGCCTTTCCCCTG
AAGTTAAAGCCAAGGCAGACCTTTCCCTTTCCTTTTCAAAACTTACATTCCCACACCAACTTATGAGGCTTATCTTGCTT
GAACAGATTTATCGCTGGTTTAAAATAATAAACGGTGAACCGTATCATAAGTAG

Protein sequence :
MVEDPFQRLPLQKVKDVLMNIDIICVGKIKEKYILDGIKEYKKRLTPYCKLRIIEAIEQKAPENLSEKEKAQVLEREGNS
ILQKLNPSSFVVALCIEGRALFSEEMAKKLSDLMIDGKSHITFIIGGSLGLSPEVKAKADLSLSFSKLTFPHQLMRLILL
EQIYRWFKIINGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 7e-39 55
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 7e-39 55
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 1e-37 55
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 3e-39 54
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 3e-39 54
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 3e-39 54
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 3e-39 54
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-39 54
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 3e-39 54
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-39 54
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 3e-39 54
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 3e-39 54
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 3e-39 54
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 3e-39 54
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 3e-39 54
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 6e-38 53
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 7e-38 51
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 6e-35 50