Gene Information

Name : TepRe1_0235 (TepRe1_0235)
Accession : YP_004459750.1
Strain : Tepidanaerobacter acetatoxydans Re1
Genome accession: NC_015519
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : 6.1.1.6
Position : 248263 - 249744 bp
Length : 1482 bp
Strand : +
Note : PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: toc:Toce_0164 lysyl-tRNA synthetase

DNA sequence :
ATGGATTATTTGAACGACCAAAGTGAAATTAATGAAATCCAAAAAGTTCGGCTGCAAAAGCTTCAAGAATTAAAAGATAT
GGGTGTAAACCCTTTTGGCGACAAATACCCCTATTCTCATAATTGCCAGCAAATAAAGGCAAACTTTGACGAGCTTGAAA
ATCAAAATGTAAAAATAGCCGGCAGGATCATGGCAATAAGAGGCCATGGTAAAGCGGCTTTTTTTGATATTCAAGACAAT
ACAGGCAAGATACAAGTATATATTAGGAAAGATAATGTATCTGATGACACTTTTAATTTGTATAAATTACTGGATATTGG
AGATATAGTAGGTATAGAGGGAAATGTTTTTAAATCCAAAAGAGGCGAAATATCCGTATCTGTTAACAACATGACTATTC
TTGCTAAATCGCTCAGACCTTTGCCTGAGAAGTGGCATGGGTTAAAAGATACTGATATAAGATACAGGCAAAGGTATTTA
GATTTAATAGTCAATCCTGAAGTAAAGCAAACATTTCTTACTAGAAGTAAAATTATATCGGCAATGCGACAGTTTTTAGA
TGACAAAGGTTTTGTTGAGGTAGAAACTCCTGTGCTGTCGCCGATAGCAGGTGGTGCTGCTGCAAGGCCTTTCGTTACTT
ATCATAATGCTTTGGACATGCAGCTGTATTTAAGGATAGCTACAGAACTATACCTAAAGCGGCTTATAGTAGGTGGATTT
GAAAAAGTATACGAATTGGGCAAGGATTTTAGGAATGAAGGTATTTCCATCAAGCATAATCCCGAGTTTACGATGGTGGA
ACTTTACCAGGCATATGCAGATTATAAAGATATGATGAAATTGGCTGAAGATATGATTGCATATATAGCCGAGAAAGTTT
TAGGCACTACGAAGATAACCTATCAAGGGGAGGAAATTGATTTAACACCACCGTGGACTAGAATGACTATGGTTGAAGCG
GTAAAACATTTTACAGGTATAGACTTTGACTCTATAGCTTCTGATGAAGAGGCAAGAAAAGTTGCTCGAGAATTACATAT
AGAAGAGATAAAAGACTGCGACACAAAGGGCAAAGTGCTAAATCTCATATTTGAAGAAAAGGTGGAACAAAACCTGGTTC
AACCCACTTTTATATATGATTATCCTATAGAAATATCGCCTCTGGCAAAGAAGAAAGAGGACAATCCCGACCTTACGTAC
AGGTTTGAAGCCTTTGTCACAGGAAGGGAAATAGCTAATGCTTTTTCTGAGCTAAATGATCCGATAGATCAAAGAGAAAG
GTTTTTGCAGCAGCTAAAAGAAAGGGAAGCCGGCGATGAAGAAGCTCATGCTTTCGATGAAGACTATATAAATGCGCTTG
AATATGGAATGCCTCCTACGGGTGGTATGGGCATAGGTGTTGATCGCCTTGTTATGCTGCTTACAGACTCTTATTCAATC
CGCGATGTCATATTATTCCCTACCATGAGACCTAAACAATAA

Protein sequence :
MDYLNDQSEINEIQKVRLQKLQELKDMGVNPFGDKYPYSHNCQQIKANFDELENQNVKIAGRIMAIRGHGKAAFFDIQDN
TGKIQVYIRKDNVSDDTFNLYKLLDIGDIVGIEGNVFKSKRGEISVSVNNMTILAKSLRPLPEKWHGLKDTDIRYRQRYL
DLIVNPEVKQTFLTRSKIISAMRQFLDDKGFVEVETPVLSPIAGGAAARPFVTYHNALDMQLYLRIATELYLKRLIVGGF
EKVYELGKDFRNEGISIKHNPEFTMVELYQAYADYKDMMKLAEDMIAYIAEKVLGTTKITYQGEEIDLTPPWTRMTMVEA
VKHFTGIDFDSIASDEEARKVARELHIEEIKDCDTKGKVLNLIFEEKVEQNLVQPTFIYDYPIEISPLAKKKEDNPDLTY
RFEAFVTGREIANAFSELNDPIDQRERFLQQLKEREAGDEEAHAFDEDYINALEYGMPPTGGMGIGVDRLVMLLTDSYSI
RDVILFPTMRPKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 7e-119 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TepRe1_0235 YP_004459750.1 lysyl-tRNA synthetase VFG1668 Protein 4e-119 50