Gene Information

Name : Celf_0979 (Celf_0979)
Accession : YP_004452503.1
Strain : Cellulomonas fimi ATCC 484
Genome accession: NC_015514
Putative virulence/resistance : Virulence
Product : winged helix family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1077755 - 1078432 bp
Length : 678 bp
Strand : -
Note : KEGG: two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence :
ATGACGCACATCCTGATCGCCGAGGACGAGGAGCGGATCGCCGCGTTCGTCGCCAAGGGCCTGCGCACCGCGGGCTACGA
CGCGACGGCCGTCACGACGGGCGACCAGGCGCTCGCACGCGTGCGCGCGGGCGGCATCGACCTGCTCATCCTCGACCTCG
GCCTGCCGGACCTCGACGGGTTCCAGGTGCTGCGGAGGCTGCGCGACGCCGGGCACGCCCTGCCGGTGATCGTGCTCACC
GCGCGGTCGTCGGTGACGGACACCGTGACGGGGCTCGAGTCCGGCGCCGACGACTACATGGCCAAGCCCTTCCGGTTCGA
GGAGCTGCTCGCGCGCGTGCGGCTGCGGCTGCGGCAGCAGCCCCAGCCGTCCGGGGAGGTCACGGTGCTCACGCACGGGC
CGCTGCACCTGGACCTGCGCACGCGCCGGATGCGCGTCGGCAGCCACGAGGTGGACCTGTCGGCCCGCGAGTTCGCGCTC
GCCGAGACGTTCCTGCGCCACCCCGGCGACGTCCTGACGCGCGAGCGGCTCCTGTCGGAGGTGTGGGGGTACGACTTCGA
CCCGGGCTCGAACGTCGTCGACGTGTACGTGCGGTACCTGCGCCGCAAGGTCGGTGCGGAGCACTTCGACACGGTCCGGG
GCGTGGGCTACCGCCTCGTGGACGCGACGGCCGGCTGA

Protein sequence :
MTHILIAEDEERIAAFVAKGLRTAGYDATAVTTGDQALARVRAGGIDLLILDLGLPDLDGFQVLRRLRDAGHALPVIVLT
ARSSVTDTVTGLESGADDYMAKPFRFEELLARVRLRLRQQPQPSGEVTVLTHGPLHLDLRTRRMRVGSHEVDLSAREFAL
AETFLRHPGDVLTRERLLSEVWGYDFDPGSNVVDVYVRYLRRKVGAEHFDTVRGVGYRLVDATAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-23 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-22 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator BAC0197 Protein 3e-24 45
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator BAC0083 Protein 8e-31 44
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator BAC0638 Protein 3e-23 43
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator BAC0308 Protein 1e-25 42
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator HE999704.1.gene1528. Protein 6e-28 42
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator BAC0125 Protein 3e-24 41
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator BAC0347 Protein 4e-23 41
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator BAC0111 Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator VFG1389 Protein 3e-32 45
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator VFG0596 Protein 2e-23 43
Celf_0979 YP_004452503.1 winged helix family transcriptional regulator VFG1390 Protein 3e-31 43