Gene Information

Name : Halhy_0648 (Halhy_0648)
Accession : YP_004445429.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 799075 - 799548 bp
Length : 474 bp
Strand : -
Note : COGs: COG1576 conserved hypothetical protein; HAMAP: Ribosomal RNA large subunit methyltransferase H; InterPro IPR003742; KEGG: coc:Coch_2090 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted; SPTR: Ribosomal RNA large subunit

DNA sequence :
ATGAAAACCACCTTCTCCTACATCGGCAAAACCGCCGACAAATACCTCGAAGAGGGCATCGGCATGTACGAGCGCCGCCT
CAAGCATTATTTGTCCTACGAAACCGTCCTGATCCCCGATGTGAAAAACGGCGGCAAACTAGAGGCTGAACAACTTAAAA
TCAAAGAAGGCGAGCAAATTCTACAGCGCCTCAAAAATGACGACTGCCTCATTTTGCTGGATGAACGGGGGAAACTGTAC
ACTTCCGAGCAATTTGCCGCCAACATGGACCAGTGGTTTCAAGCCCCCTACAAGCGCCTCGTTTTTCAGGTCGGCGGTGC
GTTTGGCTTCTCCGAAGCGGTATACCAACGCGCCAATTACAAACTTTCACTGTCGGCCATGACCTTTTCTCATCAGATGA
TTCGTTTGTTTTTTTTGGAGCAACTCTACCGTGCGATGACTATCTTGCGCAATGAACCGTATCACAACAGTTAA

Protein sequence :
MKTTFSYIGKTADKYLEEGIGMYERRLKHYLSYETVLIPDVKNGGKLEAEQLKIKEGEQILQRLKNDDCLILLDERGKLY
TSEQFAANMDQWFQAPYKRLVFQVGGAFGFSEAVYQRANYKLSLSAMTFSHQMIRLFFLEQLYRAMTILRNEPYHNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 3e-27 41
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 3e-27 41
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 3e-27 41
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-27 41
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 3e-27 41
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-27 41
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 3e-27 41
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-27 41
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 3e-27 41
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 3e-27 41
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 3e-27 41
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 3e-27 41
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 3e-27 41
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 3e-27 41