Gene Information

Name : Halhy_6214 (Halhy_6214)
Accession : YP_004450908.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 7933607 - 7934296 bp
Length : 690 bp
Strand : +
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cpi:Cpin_3739 two component transcriptional regulator, winged helix family; PFAM: Signal transduction re

DNA sequence : 
ATGGAGAAAATACCTATACTCTTAGTAGAAGATGAACCCAAAGTGGCCAGTTCTATCCAGCAGTGGCTATTGGAACACGA
CTTTTTGGTCGATGTGGCACCCGACGGTGCTGTAGGGCGTCATTTGGCCCTGACCAATGACTATGCCCTGATTCTTCTCG
ACTTAAATTTACCTTTTATTGATGGGTTTGAGGTGTGCAAGGCCATCCGTAGTACTAAACCAGATGTACCTATTATTATG
GTGACAGCATTGGGCAGTATGGACGAAAAGCTCAATGGTTTTGCCGTCGGTGCCAACGATTATCTGGTTAAACCTTTTGA
TTTTCGGGAACTCTTGGCACGGATGAGGGTTTTGCTCAAAAACGCAGTCAGCTTTAACACGGACAATCCAAGCCTGCTAA
AGGTAGCCGATTTGGAAATGAACCTCGATACCAAGAACGTTTATCGTGCTGGGCATTTGATTCCACTTACCCCCAAAGAG
TTTGGATTGTTGGTTTTTTTGATCAAAAACGAAGGTCGAGTTGTTTCTAAGTACGACATCATGGAGCAGGTTTGGGACCT
CAACTTCGACTCTGGCACCAACGTGGTGGAAGTGTACATCAATTTTTTACGCAAAAAAATTGACCGCAATTATGAACCCA
AACTGATCCATACCAAACCCGGAATGGGGTATTATCTCGCTGCAAATTGA

Protein sequence : 
MEKIPILLVEDEPKVASSIQQWLLEHDFLVDVAPDGAVGRHLALTNDYALILLDLNLPFIDGFEVCKAIRSTKPDVPIIM
VTALGSMDEKLNGFAVGANDYLVKPFDFRELLARMRVLLKNAVSFNTDNPSLLKVADLEMNLDTKNVYRAGHLIPLTPKE
FGLLVFLIKNEGRVVSKYDIMEQVWDLNFDSGTNVVEVYINFLRKKIDRNYEPKLIHTKPGMGYYLAAN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-38 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-38 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_6214 YP_004450908.1 winged helix family two component transcriptional regulator BAC0125 Protein 1e-44 45
Halhy_6214 YP_004450908.1 winged helix family two component transcriptional regulator BAC0083 Protein 3e-42 45
Halhy_6214 YP_004450908.1 winged helix family two component transcriptional regulator BAC0111 Protein 1e-45 45
Halhy_6214 YP_004450908.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-41 44
Halhy_6214 YP_004450908.1 winged helix family two component transcriptional regulator BAC0638 Protein 6e-37 44
Halhy_6214 YP_004450908.1 winged helix family two component transcriptional regulator BAC0347 Protein 2e-40 42
Halhy_6214 YP_004450908.1 winged helix family two component transcriptional regulator BAC0308 Protein 4e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_6214 YP_004450908.1 winged helix family two component transcriptional regulator VFG0596 Protein 7e-39 45