Gene Information

Name : Halhy_5176 (Halhy_5176)
Accession : YP_004449875.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 6593153 - 6595702 bp
Length : 2550 bp
Strand : -
Note : COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR001943:IPR013093:IPR 019489:IPR003593; KEGG: cpi:Cpin_6630 ATPase AAA-2 domain protein; PFAM: ATPase associated with various cellular activities, AAA-2; Clp,

DNA sequence :
ATGAATAACCGAAGATTTTCACTCAAGGTAAAGGAAGTCATTAAAAAAAGCCGGGAAGAAGCTTTCCGCTTAGGGCATGA
CTTTATCGGTACAGAGCATCTTCTTTTGGGGATTGTATCCGAAAAAGAAAGCTTGGCAGTTCGCGTCCTTGAATCCTTGG
ATGTAGATTCCGCTGAGTTGAAACAAACCCTGGAAGAGTCCGTGCAAAAAATACCCGCAAGCAACACCAGTTTGAGTGTG
GGTACCCTCCCACTCAACAAACAGGCCGAAAAAGTACTTAAAGTCACTTTTTTGGAAGCAAAAATGCTCAAAAGTGAAGA
GATCAGCCCAGAACACCTGGTGCTCTCCATTTTAAAGCACAAGGAAAACCCAGCTTCTAAAATTCTCAATCAATTCGACG
TGGATTACGAAATTTACAAAGCCGAGCTCGAATACGTAAAGCAGGAGCAAGATTTCTCTAGCATCGAGCCGCCTTATAAC
CAAGCACCACAAGATAATGATGACCCCTACGACGACGACGATCGTCAAGGTGGTTTTCAGCAGCGTAAAGGCAACGCCAA
ATCCCGCACTCCAGTGTTGGACAACTTTGGCAGAGACATTACCAAACTAGCTGAAGAGGGCAAGTTAGACCCCATTATCG
GCCGGGAAAACGAAATCGAGCGGGTATCTCAAATCCTGAGTCGCCGCAAAAAGAACAACCCTATCCTCATCGGAGAACCC
GGGGTGGGCAAAACGGCGATAGTGGAAGGGCTGGCCTTGCGCATCATGCAGCGCAAAGTGTCGCGTACGCTGTTCAACAA
ACGCATCGTCATGCTGGACCTGGCAGCCTTGGTTGCCGGAACCAAATACCGTGGCCAGTTTGAAGAACGTATGAAAGCGA
TCATGAATGAATTGGAAAAATCGCGCGATGTTATCCTCTTCATTGATGAAATCCACACCATTGTTGGCGCCGGAGGTGCT
ACAGGCTCTCTGGATGCCTCCAACATCTTCAAGCCTGCCCTGGCTCGGGGAGAACTCCAGTGCATCGGGGCATCTACGCT
GGATGAATACCGCCAACACATTGAAAAGGATGGCGCGCTCGATCGTCGCTTCCAAAAAGTAATGGTTGATCCCCCCTCCG
CCGAAGAAGCCATCCACATTTTGCACAACATCAAGTCGAAGTACGAAGAGTTCCACAACGTCATCTACGATGATGATGCC
ATCAAAGCTTGTGTACGCCTCAGTGACCGCTACATCACCGATCGGTTCCTTCCCGATAAAGCCATCGACGTACTGGATGA
AGTAGGCGCCCGGGTTCACTTGAAGAACATTCACGTTCCGAAGCACATCGAAGATTTGGAAAAACAAATCGAGGAGCTGA
AAGAACTGAAAAACCAGGCCGTGAAAAACCAGCAGTACGAAAGGGCTGCCGATTTGCGCGATCGCGAATCCAAGTTAGTG
CGCCAATTGGAGTTCGCCAAAGTGCAATGGGAAGAAGATTCCAAGACCAAACGTTATCCTGTTGGTGAAGATGACATTGC
CGAAGTTGTATCCATGATGACCAATATCCCCGTAATGCGGGTAGCTCAAAGCGAAAGCAAAAAGCTGGTGAGCATGGAAA
AAGACATGGGCGGTGCGATCATTGGCCAGGATGAAGCGCTGAAAAAAATTACCAAAGCCATCCAACGCAACCGGGTTGGC
CTTAAAGACCCCACCAAACCCATCGGCTCTTTCATTTTCCTCGGCCCAACGGGTGTAGGTAAAACGGAATTGGCCAAGGC
TCTGGCGCGCTACCTCTTCGACTCTGAAGATGCCTTGATCCGCATCGACATGAGTGAATACATGGAGAAATTCTCGGTGA
GCCGCCTGATCGGTGCACCTCCGGGATACGTTGGTTACGAAGAAGGGGGCCAGTTGACGGAAAAAGTACGGCGCAAGCCC
TATTCGGTCGTGTTGCTTGACGAAATCGAAAAAGCACACCCGGATGTATACAACATTCTGCTGCAGGTATTGGACGATGG
TCAGTTGACCGACGGTCTGGGCCGCAGGGTAGACTTCAAAAACACCCTGATCATCATGACCTCCAACATTGGGGTACGCC
AGTTGAAGGATTTTGGTCAAGGGGTTGGTTTTGCCACCAAGTCTCGGCAAGAGGCGGCGGAAGACAATACCAAAGCCGTT
ATCCAAAACGCCTTGAAGCGCACCTTCTCTCCGGAATTCCTCAACCGCATAGATGACGTGGTGGTATTCAATAGCCTGGG
CCAAGAGGAGATTTTCAAAATCATCGACATTACGCTGAAAGACCTGCACCGTAGACTTGCTACCATGAACTTCAAGCTGG
TCATCAGTGATGAAGCCAAAAAGTTTGTGGCCGAAAAAGGATTTGATCCTCAATTCGGTGCTCGTCCGCTCAATCGGGCC
ATTCAGAAGTACCTGGAAGACCCGCTTGCTGAGTTCATTTTGAATGACCAGCCGCAGGAAGGTGCCCTTTTAGAAGCCAT
CTTGACCGATGAAAAGGACAATTTACGTATCGTGCTCGCAAAAGAAGTGAATACGGACGTCAAGGAATAA

Protein sequence :
MNNRRFSLKVKEVIKKSREEAFRLGHDFIGTEHLLLGIVSEKESLAVRVLESLDVDSAELKQTLEESVQKIPASNTSLSV
GTLPLNKQAEKVLKVTFLEAKMLKSEEISPEHLVLSILKHKENPASKILNQFDVDYEIYKAELEYVKQEQDFSSIEPPYN
QAPQDNDDPYDDDDRQGGFQQRKGNAKSRTPVLDNFGRDITKLAEEGKLDPIIGRENEIERVSQILSRRKKNNPILIGEP
GVGKTAIVEGLALRIMQRKVSRTLFNKRIVMLDLAALVAGTKYRGQFEERMKAIMNELEKSRDVILFIDEIHTIVGAGGA
TGSLDASNIFKPALARGELQCIGASTLDEYRQHIEKDGALDRRFQKVMVDPPSAEEAIHILHNIKSKYEEFHNVIYDDDA
IKACVRLSDRYITDRFLPDKAIDVLDEVGARVHLKNIHVPKHIEDLEKQIEELKELKNQAVKNQQYERAADLRDRESKLV
RQLEFAKVQWEEDSKTKRYPVGEDDIAEVVSMMTNIPVMRVAQSESKKLVSMEKDMGGAIIGQDEALKKITKAIQRNRVG
LKDPTKPIGSFIFLGPTGVGKTELAKALARYLFDSEDALIRIDMSEYMEKFSVSRLIGAPPGYVGYEEGGQLTEKVRRKP
YSVVLLDEIEKAHPDVYNILLQVLDDGQLTDGLGRRVDFKNTLIIMTSNIGVRQLKDFGQGVGFATKSRQEAAEDNTKAV
IQNALKRTFSPEFLNRIDDVVVFNSLGQEEIFKIIDITLKDLHRRLATMNFKLVISDEAKKFVAEKGFDPQFGARPLNRA
IQKYLEDPLAEFILNDQPQEGALLEAILTDEKDNLRIVLAKEVNTDVKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_5176 YP_004449875.1 ATPase AAA VFG0079 Protein 0.0 50
Halhy_5176 YP_004449875.1 ATPase AAA VFG0080 Protein 3e-158 50