Gene Information

Name : Halhy_4780 (Halhy_4780)
Accession : YP_004449487.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Resistance
Product : major facilitator superfamily protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 6038317 - 6039534 bp
Length : 1218 bp
Strand : +
Note : COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_4881 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; IMG reference gene:2504774172; PFAM: Major Facilita

DNA sequence :
ATGAGCGAAAAACGCCAAGGATCGGCCCTGACTTTCATTTTTATTACAATGCTGATCGATGTAATTGGTTTGGGCATTAT
TATCCCGGTGATGCCAAAACTCATTATGGAACTCAGCGGGGAAGGCCTTAGTTCGGCAGCTCGTTACGGCGGTTGGATGG
TTTTTGCTTATGCTGCGATGCAATTCTTTTTTTCGCCCATCTTAGGCGGACTGAGTGATCAATATGGCCGCAGACCCATC
CTGCTATTTTCCTTGTTTGGTTTTGGTATCGACTACATCATCCTGGGGTTCGCCCCCACCATTGGCTGGTTGTTTTTTGG
CCGGGTCGTTGCGGGCATCACGGGCGCAAGTTTTACGGCCGCCGGAGCCTATATTGCCGATGTGAGTCCACCGGAAAAGC
GTGCGCAGAACTTTGGTTTGATTGGAGCTGCTTTCGGACTGGGCTTCATTCTGGGTCCGGTTTTGGGCGGATTTTTGGGA
ACTTATGGCGCCAGGGTACCGTTTTTTGTATCTGCAGGGCTTGCCTTGCTCAACTGGTTGTATGGGTATTTCATCTTACC
TGAGTCGCTCAAGGTTGAAAACCGCCGCAAATTTGAATGGTCGCGTTCCAACCCGATCAATTCCTTGCTGAACTTGCGGC
GGTATCCGATCGTACTGGGCCTGGTTTTCCCCAATGTATTGATCATGATTGCCGGGTTTGCCACCCAAACCACCTGGACC
TATTACTGCATGGATAAATTTTCCTGGACGGAAAAAATGGTCGGCCTGTCCTTGGGTTTTGTGGGGGTGATGGCGGCATT
GGTGCAAGGAGGACTTACGCGGGCGCTGATTCCTCGCCTGGGCAATTATCGCTCCATTTCCTTTGGACTGCTGCTGTATT
CCATTGGCTTTGTATTGTACGCCCTGGCTGATCAGGGTTGGATGATGTTCGCCATTACCGTCATTGCTTCATTGGGGGGC
ATTGCCATGCCCGCCTTGCAAGGGGTGATGTCGAATCAAGTGCCCATGAATGAGCAAGGAGAACTACGGGGTGCCTTGAC
CAGTGTGATGAGTTTGACCTCGGTGGTTGGCCCCTTGATTATGACCAATTTATTTGCGTATTTTACCTCCTCCGCTGCGC
CGATTCAATTGCCCGGGGCACCGTTTTGGATGGGGGCTTTGTTGATTTTTTTGAGTTGGCTTTGGATCATTCAGTCTTTG
AAAGGACTAAAGATATAA

Protein sequence :
MSEKRQGSALTFIFITMLIDVIGLGIIIPVMPKLIMELSGEGLSSAARYGGWMVFAYAAMQFFFSPILGGLSDQYGRRPI
LLFSLFGFGIDYIILGFAPTIGWLFFGRVVAGITGASFTAAGAYIADVSPPEKRAQNFGLIGAAFGLGFILGPVLGGFLG
TYGARVPFFVSAGLALLNWLYGYFILPESLKVENRRKFEWSRSNPINSLLNLRRYPIVLGLVFPNVLIMIAGFATQTTWT
YYCMDKFSWTEKMVGLSLGFVGVMAALVQGGLTRALIPRLGNYRSISFGLLLYSIGFVLYALADQGWMMFAITVIASLGG
IAMPALQGVMSNQVPMNEQGELRGALTSVMSLTSVVGPLIMTNLFAYFTSSAAPIQLPGAPFWMGALLIFLSWLWIIQSL
KGLKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 1e-50 42
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 1e-50 42
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 2e-50 42
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 1e-50 42
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 2e-42 41
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 2e-42 41
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 2e-42 41
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 2e-42 41
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 7e-51 41
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 5e-51 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_4780 YP_004449487.1 major facilitator superfamily protein NC_011586.7045189.p0 Protein 7e-47 43
Halhy_4780 YP_004449487.1 major facilitator superfamily protein AY264780.2.gene3.p01 Protein 4e-54 43
Halhy_4780 YP_004449487.1 major facilitator superfamily protein Y19114.gene.p01 Protein 3e-49 42
Halhy_4780 YP_004449487.1 major facilitator superfamily protein NC_009085.4918440.p0 Protein 1e-39 42
Halhy_4780 YP_004449487.1 major facilitator superfamily protein AF090987.gene.p01 Protein 1e-47 42
Halhy_4780 YP_004449487.1 major facilitator superfamily protein X75761.gene.p01 Protein 5e-50 42
Halhy_4780 YP_004449487.1 major facilitator superfamily protein CP001485.1.gene2821. Protein 3e-51 41
Halhy_4780 YP_004449487.1 major facilitator superfamily protein AF534183.gene.p01 Protein 3e-51 41
Halhy_4780 YP_004449487.1 major facilitator superfamily protein NC_010410.6002597.p0 Protein 3e-51 41