Gene Information

Name : Halhy_3842 (Halhy_3842)
Accession : YP_004448567.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Virulence
Product : phosphonate-transporting ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4850148 - 4850825 bp
Length : 678 bp
Strand : -
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: sli:Slin_4589 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type

DNA sequence : 
ATGATAAAGACCGTCAACCTACAAAAGGTTTTCACGACCGAAGAAGTAGAAACCACCGCCTTAAACGGCATCAGCCTGGA
AATCCAGGACGGAGAATTTGTTGCCATCATGGGGCCTTCTGGCTGCGGTAAATCTACCTTGCTCAACATCCTGGGCTTGT
TGGACAATCCGTCTTTAGGAGAATATCATTTCTATGGCACCGAAGTAGCCAAAATGCCTGAACGCAGTCGGGCACAATTG
CGCAAAGGAAACATTGGTTTTGTATTCCAGAGCTTCAACCTGATCGATGAGCTTACGGTATACGAAAACGTGGAGCTTCC
GCTGTTGTACCTCAAAGTTCCTGCTGCTGACCGCAAAAAGCGCGCTGAGGCATCTCTTGAGCGGATGAACATGATGCACC
GCCGCAATCACTTTCCACAACAATTATCGGGTGGTCAGCAACAGCGTACGGCCATTGCCCGTGCCGTAGTGGCTACACCC
AAGATGATCCTTGCGGACGAACCTACGGGTAACCTCGATTCTTCCAACGGGGAACAGGTAATGAACCTGCTCCGTGAACT
CAATAACGAAGGGACCACCATCGTGATGGTGACGCACTCACCGCACGATTCAGGTTTTGCCCACCGGGTCATCAATTTGT
TTGATGGTAAGGTGGTGACGGAGAATTTTCATGTTTAG

Protein sequence : 
MIKTVNLQKVFTTEEVETTALNGISLEIQDGEFVAIMGPSGCGKSTLLNILGLLDNPSLGEYHFYGTEVAKMPERSRAQL
RKGNIGFVFQSFNLIDELTVYENVELPLLYLKVPAADRKKRAEASLERMNMMHRRNHFPQQLSGGQQQRTAIARAVVATP
KMILADEPTGNLDSSNGEQVMNLLRELNNEGTTIVMVTHSPHDSGFAHRVINLFDGKVVTENFHV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-32 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_3842 YP_004448567.1 phosphonate-transporting ATPase NC_012469.1.7686878. Protein 3e-52 49
Halhy_3842 YP_004448567.1 phosphonate-transporting ATPase NC_008702.1.4606598. Protein 4e-42 48
Halhy_3842 YP_004448567.1 phosphonate-transporting ATPase CP001581.1.gene798.p Protein 2e-36 46
Halhy_3842 YP_004448567.1 phosphonate-transporting ATPase NC_012469.1.7686946. Protein 1e-31 45
Halhy_3842 YP_004448567.1 phosphonate-transporting ATPase CP001581.1.gene598.p Protein 9e-35 43
Halhy_3842 YP_004448567.1 phosphonate-transporting ATPase NC_012469.1.7685735. Protein 6e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_3842 YP_004448567.1 phosphonate-transporting ATPase VFG0869 Protein 7e-24 42
Halhy_3842 YP_004448567.1 phosphonate-transporting ATPase VFG2059 Protein 9e-18 41