Gene Information

Name : Halhy_3358 (Halhy_3358)
Accession : YP_004448089.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 4234299 - 4236995 bp
Length : 2697 bp
Strand : +
Note : COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR004176:IPR003959:IPR013093:IPR 019489; KEGG: phe:Phep_1456 ATP-dependent chaperone ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-ty

DNA sequence :
ATGACCTACGACAATTTCACCATAAAAGCGCAGGAATCCATCCTGAAGTCCCAGCAAATTGCGGCGGGATTGGACCAGCA
GCAGGTGGACACCGTCCATTTGATCAAAGGAATTTTAGAAACCGATGAGAGTGTGGCCGGTTTTTTACTCGGTAAATCCG
AAGTAAACCTCGATATGCTGCGCCGCAAGTTGGACGAAGCCATCCTCAAGTACCCCAAAGTACAAGGCTCCGACAAGCAG
TTTTTGACCACCGACGCCAACAAATCCTTGAGTAGAGCCAAAGTTTTGCTCAAAGAATTTGGTGACCAATACATTTCTGT
CGAGCTGATGCTCCTGGGCATTGTGCAAGGGGATGACTCTGGTGCCAAACTACTCAAAGAACTGGGTGCCAACGAGCAAT
TGCTCAAAGGGGCCATCAACGAACTGCGCAAGGGTCGCAAAGTGACCGATCAAAACTCGGAAGACAGCTACAATGCCCTG
GCCAAATACGCGATCAACCTCAACGAACGCGCCGAAAGTGGCAAGTTAGACCCCATTGTAGGCCGCGATGACGAAATCCG
CCGGGTACTGCACATCCTTTCGCGCCGCAAAAAAAACAACCCGATCCTGATTGGCGAAGCCGGTGTGGGTAAAACCGCCA
TCGTAGAAGGTCTGGCCTGGCGCATTGTCAAAGGGGACGTGCCCGAAAGCCTGCAAAGCAAAAAAATCTTTGTACTCGAC
ATCGCTGCGCTGATCGCTGGTGCCAAGTACAAAGGGGAATTCGAAGAGCGCCTCAAAGGGGTAATTCAGGAAGTAACCGA
ATCCAACGATACCATCATTCTCTTTGTAGACGAAATCCACACCTTGATTGGTGCGGGTGGAGGCAATGGGGCGATGGATG
CAGCCAATATCCTCAAGCCCGCCCTGGCGCGTGGCGAATTGCGCACCATTGGCGCGACTACTTTGGACGAATACCAAAAA
TACTTCGAAAAAGACAAGGCCCTGGTGCGTCGCTTCCAGGAGGTACTGATCGACGAACCGAGTGTGGAAGACACCATCTC
CATCTTGCGCGGTTTGCAGGAACGTTATGAGGTGTACCACAAGATCGAGATCATGGACGAGGCGCTGGTCGCAGCAGCAG
AATTGAGTAGCCGCTATATCTCGGATCGCCAATTGCCCGATAAGGCCATCGACCTCATCGACGAGGCTGCGGCCCGCTTG
CGCCTGGAACTGGACTCCCTGCCTGAAGAAATTGACGAGTGGGACCGCAAGGTACGCCAACTCGAAATCGAGCGCGAAGC
CGTCAAACGGGAGAAAAACAAAAAACAACAAGACCTCATTGAGGAAAACATCGCCAACGCCAAACAAAAGCGCGACTCGC
TGATGGCCGCCTGGAAAGGAGAGAAAGAGTTGGTGGATACCGTCCAGGGCGTTAAGAAAAAAATGGAGGAACTGGAAATC
CAGGCCGAACGCGCCGAACGCGCCAGTGACTACGAAATGGTGGCCAAAATTCGCTACGGTGAACTGGAAGACCAAAAACA
GATCCTCAAGGTAGCGGAAGAAAAACTTGCCGCCTTACCCGAAGACAGCCGCTTCACCAATGATAAAGTAACCGCCAACG
ACATTGCTTACATCGTGAGCCGCTGGACGGGGATTCCGATAGACAAAATGACCCAGAGCGAAAAGGACAAACTCCTGAGC
CTAGAAAAAGAAATTGGTCAGCGCCTGATTGGTCAGGACGAAGCAGTAAAAGCCGTGTCCGACGCTATTCGCCGCAGCCG
GGCGGGTTTGCAAGACGCCGATCGTCCGATTGGTTCTTTCATCTTCCTGGGCCCAACCGGGGTGGGTAAAACCGAATTGG
CCAAAACCATTGCCGAAGTCCTCTTCGACGATGAAAAGGCCATGACCCGCATCGACATGAGTGAATACCAGGAGAAACAC
ACCGTTTCGCGTCTGGTGGGTGCACCTCCGGGATACGTGGGTTACGACGAAGGGGGGCAGTTGACCGAGGCTGTGCGCCG
CAGACCATATAGCATCATCCTGCTGGACGAGATCGAAAAAGCACACCCGGATACCTTCAACATCCTGCTGCAAGTGCTGG
ACGATGGCCGCCTGACTGACAACAAAGGCCGGGTTGCCAACTTCAAAAATACCATCATCATCATGACCTCCAACATGGGA
TCTGACCTGATCATGGAGAATTTTGATGACCTGGAGGAAATGGGTGAAAAACACCGCACCGAAATTATTGCCACCACCAA
GGAAGAGGTATTTAACCTGCTGAAAGAAAACCTGCGGCCAGAATTCCTGAACCGCATCGATGAGCAGATCCTTTTCTTGC
CGTTGAACAAATCGGAGATCAAACAAATCCTGGACCTTTTGCTGAAAAAGACCCAGAAAATGCTGGCCAAGCAGGGCATC
ATCCTCAAGGTGAGCGACCCCGCCAAAGACCTCCTGGCCGACATGGGCTACGATCCGCAGTTTGGCGCACGCCCCATGAA
GCGGGTGCTGCAAAAGGACGTGATCAACGAGTTGTCCAAACTGGTACTGAGTGGCGAGGTTGCGCTGGGCGATACGATCT
ATGTGCATACGGATAAGAAGGGCTTAACCTTCAGTAAGGAGCCATATGAAGGCGCCATCAATTTGCCGCCTGATCCGGTA
GATGATGGGGATGATGATGAAAAAGAAGTAGAAAAGCCTGTGGAAGAGAAGGCGTAA

Protein sequence :
MTYDNFTIKAQESILKSQQIAAGLDQQQVDTVHLIKGILETDESVAGFLLGKSEVNLDMLRRKLDEAILKYPKVQGSDKQ
FLTTDANKSLSRAKVLLKEFGDQYISVELMLLGIVQGDDSGAKLLKELGANEQLLKGAINELRKGRKVTDQNSEDSYNAL
AKYAINLNERAESGKLDPIVGRDDEIRRVLHILSRRKKNNPILIGEAGVGKTAIVEGLAWRIVKGDVPESLQSKKIFVLD
IAALIAGAKYKGEFEERLKGVIQEVTESNDTIILFVDEIHTLIGAGGGNGAMDAANILKPALARGELRTIGATTLDEYQK
YFEKDKALVRRFQEVLIDEPSVEDTISILRGLQERYEVYHKIEIMDEALVAAAELSSRYISDRQLPDKAIDLIDEAAARL
RLELDSLPEEIDEWDRKVRQLEIEREAVKREKNKKQQDLIEENIANAKQKRDSLMAAWKGEKELVDTVQGVKKKMEELEI
QAERAERASDYEMVAKIRYGELEDQKQILKVAEEKLAALPEDSRFTNDKVTANDIAYIVSRWTGIPIDKMTQSEKDKLLS
LEKEIGQRLIGQDEAVKAVSDAIRRSRAGLQDADRPIGSFIFLGPTGVGKTELAKTIAEVLFDDEKAMTRIDMSEYQEKH
TVSRLVGAPPGYVGYDEGGQLTEAVRRRPYSIILLDEIEKAHPDTFNILLQVLDDGRLTDNKGRVANFKNTIIIMTSNMG
SDLIMENFDDLEEMGEKHRTEIIATTKEEVFNLLKENLRPEFLNRIDEQILFLPLNKSEIKQILDLLLKKTQKMLAKQGI
ILKVSDPAKDLLADMGYDPQFGARPMKRVLQKDVINELSKLVLSGEVALGDTIYVHTDKKGLTFSKEPYEGAINLPPDPV
DDGDDDEKEVEKPVEEKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 1e-159 44
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-102 42
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 3e-103 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 2e-103 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_3358 YP_004448089.1 ATPase AAA VFG2076 Protein 3e-123 44
Halhy_3358 YP_004448089.1 ATPase AAA VFG2084 Protein 3e-112 42