Gene Information

Name : Halhy_1792 (Halhy_1792)
Accession : YP_004446551.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Resistance
Product : copper-translocating P-type ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : -
Position : 2238986 - 2241037 bp
Length : 2052 bp
Strand : -
Note : COGs: COG2217 Cation transport ATPase; InterProIPR006403:IPR006416:IPR001757:IPR008250:IPR 005834; KEGG: mtt:Ftrac_2065 copper-translocating p-type atpase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; PRIAM: Copper

DNA sequence :
ATGGAAAATCACCATCACCATCAAGATAAACCCCAAACTCAAAAAGTGCAAAAACCCATTGAGCCTGAACACCATCACGC
TGCCGCCAATCCCCCCATGAATCATGCTGGCCATGACCACCATGCCATGATGATTGCTGATTTTCGAAAAAGGTTTTACA
TCGTTCTGATGTTGACCATCCCCATCATGCTACTATCGCCCATGATTCAGCAATTTATGGGGGTGAATTGGCAATTTCCC
GGATCTTCATACCTTCTGTTGACTTTGTCGTCAGTCGTATTTTTTTATGGCGGCTGGCCATTTTTGACAGGCTGGATGGA
AGAGATAAAAGCAAAGAACCCCGGGATGATGTTTTTGATCGGTTTTGCCATTACCGTTGCCTACATCTACAGTGTAGCCA
TTGTATTTGGTTTGCAAGGGATGGATTTTTTCTGGGAACTGGCCACCTTAATCCTCATCATGCTTTTAGGCCACTGGATA
GAAATGAAATCGGTGGCCGGAGCCTCCAAAGAATTGGAACTGTTGGTGCAGTTGATGCCAGCGGAAGCTCACCTGGTGAT
GTCAGATATGATCCATGATGTAAAAACCGATACACTCAAAGCAAAAGATGTCATTTTGGTAAAACCTGGCGAAAAAGTTG
CTGCGGATGGCATTGTTGCGGAAGGAGAAAGTTACCTCAATGAATCGATGTTGACGGGGGAATCAAAACCCGTAAAAAAA
TCCACTGGCGATAAAGTCATTGCTGGTGCCATCAATGGCAACGGTGCCATCAAAGTTACCGTGTCTCATGCCGCCAAAGA
TTCGTACCTCTCGCAGGTCATCAAGTTGGTGGACGACGCCCAGAAATCAAAATCCAAAACCCAATTGTTGGCCGACCAGG
CTGCCAGGTGGCTTACCCTCATCGCTATCGTTGCGGGGCTTGCCACTTTTTTTTACTGGTATTTAACGGGTCAATCTTTG
GCTTTTGCCATGGAAAGAATGGTTACCGTCATTGTCATTTGTTGCCCGCATGCGCTGGGCTTGGCTGTACCTTTGGTCGT
GGCAAAGTCAACTGCCTTGTCTGCAAAACAAGGGCTGCTCATCAAAAATCGGACAGCTTTTGAAAATGCCAGAAAGATCA
GCACCATCGTATTTGATAAAACGGGAACCCTTACCGTAGGCAAATTTGAGGTGTCAAAAATTATTGCGCTGCAAAGTGGT
CTAACTGAAAATGAAATCATCCGTTTGGCCGCAGCATTGGAGCAAAAATCAGAACACCCCATCGCTACCGGTATCCTGAA
AAAGGCGAAAGATGCAGCTATTGCTATTCCCGACACAAACTATTTTAACGCCATCACGGGCAAGGGCGTAGAGGCTACCG
TGGAGGGCAAAAAGATATTGGTGGTCAGTCCAGGTTATCTCACCGAAAACAACATTCCTCTTCCTTCGGGTTTCAGTGCC
AACCCTACCGAAACGGTGGTTTTTGTCATCATCAACAATGAACTGGCTGGATACATCGCCTTGTCAGATGAAATCCGCCC
TGAATCAGCAGTCGCAATCAAAACCTTGAGCGAAAACAAGATCAAATCAATTTTGCTCACCGGTGACAATGCCAAGGTTG
CCAAAAGTGTAAGTGAAACTTTGGGTATGGACAGTTTTATAGCGGAAGTATTGCCGCATCAAAAACTAGAAAAAATCAAA
GAATTGCAAAGCAAAGGAGAATTTGTGGCCATGACGGGAGACGGCGTAAATGATGCTCCGGCCCTGGCACAAGCAGACAT
TGGCATAGCAGTAGGTTCCGGCAGCGACATCGCCGCAGAAACGGCAGGGATTATTTTGGTGAACAGCAACCCAAAAGATG
TGGTGAGCCTGATTTTATTTGGAAAAGCAACGTACCGCAAGATGATTCAAAACCTCATCTGGGCCACCGGGTACAACGTG
ATCGCCTTGCCCTTGGCGGCTGGCGTATTGTCCCCTTGGGGGATCTTGCTCAGCCCTGCCGCTGGTGCGGTTCTAATGAC
GGTGAGCACCGTGGTGGTGGCCATCAATGCCAGCTTGCTGAAAGTAAAATGA

Protein sequence :
MENHHHHQDKPQTQKVQKPIEPEHHHAAANPPMNHAGHDHHAMMIADFRKRFYIVLMLTIPIMLLSPMIQQFMGVNWQFP
GSSYLLLTLSSVVFFYGGWPFLTGWMEEIKAKNPGMMFLIGFAITVAYIYSVAIVFGLQGMDFFWELATLILIMLLGHWI
EMKSVAGASKELELLVQLMPAEAHLVMSDMIHDVKTDTLKAKDVILVKPGEKVAADGIVAEGESYLNESMLTGESKPVKK
STGDKVIAGAINGNGAIKVTVSHAAKDSYLSQVIKLVDDAQKSKSKTQLLADQAARWLTLIAIVAGLATFFYWYLTGQSL
AFAMERMVTVIVICCPHALGLAVPLVVAKSTALSAKQGLLIKNRTAFENARKISTIVFDKTGTLTVGKFEVSKIIALQSG
LTENEIIRLAAALEQKSEHPIATGILKKAKDAAIAIPDTNYFNAITGKGVEATVEGKKILVVSPGYLTENNIPLPSGFSA
NPTETVVFVIINNELAGYIALSDEIRPESAVAIKTLSENKIKSILLTGDNAKVAKSVSETLGMDSFIAEVLPHQKLEKIK
ELQSKGEFVAMTGDGVNDAPALAQADIGIAVGSGSDIAAETAGIILVNSNPKDVVSLILFGKATYRKMIQNLIWATGYNV
IALPLAAGVLSPWGILLSPAAGAVLMTVSTVVVAINASLLKVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 4e-95 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_1792 YP_004446551.1 copper-translocating P-type ATPase BAC0629 Protein 7e-168 57
Halhy_1792 YP_004446551.1 copper-translocating P-type ATPase BAC0079 Protein 2e-127 43
Halhy_1792 YP_004446551.1 copper-translocating P-type ATPase BAC0383 Protein 2e-113 43