Gene Information

Name : Halhy_1286 (Halhy_1286)
Accession : YP_004446054.1
Strain : Haliscomenobacter hydrossis DSM 1100
Genome accession: NC_015510
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 1611413 - 1612945 bp
Length : 1533 bp
Strand : +
Note : COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR002313; KEGG: phe:Phep_1559 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicas

DNA sequence : 
ATGCATTTAAGTGAACAGGAAATCATCAGAAGGGAACACCTGGAGGAATTGCGCAAACTGGGCATCGACCCCTACCCTGC
CGAAGCATTTGCAGTCAATGCTTTAGCAGCAGATATCAAGGCGCAATTCAACGACGATGCACCAGAGCAGTTCCAAACGG
TGGCATTGGCCGGCCGAATGATGGTAGTACGGGAAAAAGGTAAAGTCACTTTTGCGGAATTGCAAGACAGCAGTGGACGC
ATCCAGCTGTACATCTCGCGCAGTGACATTGCCGATGGGGAAAATTTTGACCTGTATGATGTGGTGTTGAAACGCCTGCT
CGATTTTGGCGATTATATTGGGGTAAAAGGGTTTGTATTTCGCACGCGCATGGGCGAAATCACCCTGCACGTCAAATCAT
TGACTTTGCTCAGCAAATCCCTGCGGCCATTGCCGATGGTAAAAACCCGGGTGATTGAAGCAACGGGTGAAACGGAGGTA
TACGATGCATTCACCGACCCGGAGCAACGGCACCGCATGCGTTACGTTGACCTGACGGTTAATCCACAGTTCAAAGCAGC
CTTCATTACCCGCAGCCGGATCATCAGCGCCATGCGTCGTTTTTTTGACGACAAAGGCTGGCTGGAAGTAGAAACGCCCA
TTTTGCAGCCCATCCACGGTGGCGCGGCGGCACGGCCTTTCCAAACCCATCACAATACGCTGGACATGCCGCTGTACATG
CGCATCGCCAACGAATTGTACCTCAAGCGCCTGATCGCAGGTGGTTTTGACGGGGTGTATGAAATTGGCAAAATGTTCCG
CAATGAGGGCATGGACCGTACCCACAACCCGGAGTTCACCGCGATGGAGATCTACGTGGCGTACAAAGATTATTACTGGA
TGATGGAAATGGTGGAGCAATGCCTGGAACACATCGCCCGCGCCATCAACGACAATAATCCGCTGATCAAATTTGACCAA
CACGAGATCAACTACGCTGGGCCTTACCGTCGCCTGACCATGTACGATTCGATTAAGGAATACACGGGCGCTGATATTTC
GGAGATGGACGAAGCCCAATTGCGCGATTTGTGCAAACAACTGCACATCGAAATTGACAACTCCATGGGGCGCGGCAAAT
TGATCGATGAAATTTTCGGTGCCAAAGTAGAAAAGAACCTGATTCAGCCGACATACATCATCGACTACCCGGTGGAAATG
AGCCCTTTGGCTAAAAAACACCGCAGCAAAGCGGGTTTGGTGGAGCGTTTTGAGTTGTTTGTCAACGGCAAAGAAATCGC
GAATGCTTATTCAGAGCTGAACGACCCGATTGACCAGCGCGAGCGCCTTGAAGACCAACTCACCCTGGCTGCTCGTGGCG
ATCACGAGGCCATGGCCATGGACGAAGACTTTTTGCGGGCACTTGAATACGGCATGCCACCAACTTCAGGTTTGGGGATC
GGCATCGACCGTTTGACCATGTTTATGACGAATAATCATACGATTCAGGAGGTGTTGTTCTTTCCGCAGATGCGGCCAGA
GAAGGGAGAGTGA

Protein sequence : 
MHLSEQEIIRREHLEELRKLGIDPYPAEAFAVNALAADIKAQFNDDAPEQFQTVALAGRMMVVREKGKVTFAELQDSSGR
IQLYISRSDIADGENFDLYDVVLKRLLDFGDYIGVKGFVFRTRMGEITLHVKSLTLLSKSLRPLPMVKTRVIEATGETEV
YDAFTDPEQRHRMRYVDLTVNPQFKAAFITRSRIISAMRRFFDDKGWLEVETPILQPIHGGAAARPFQTHHNTLDMPLYM
RIANELYLKRLIAGGFDGVYEIGKMFRNEGMDRTHNPEFTAMEIYVAYKDYYWMMEMVEQCLEHIARAINDNNPLIKFDQ
HEINYAGPYRRLTMYDSIKEYTGADISEMDEAQLRDLCKQLHIEIDNSMGRGKLIDEIFGAKVEKNLIQPTYIIDYPVEM
SPLAKKHRSKAGLVERFELFVNGKEIANAYSELNDPIDQRERLEDQLTLAARGDHEAMAMDEDFLRALEYGMPPTSGLGI
GIDRLTMFMTNNHTIQEVLFFPQMRPEKGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 7e-92 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halhy_1286 YP_004446054.1 lysyl-tRNA synthetase VFG1668 Protein 4e-92 45