Gene Information

Name : AGROH133_13722 (AGROH133_13722)
Accession : YP_004444598.1
Strain :
Genome accession: NC_015508
Putative virulence/resistance : Virulence
Product : iron ABC transporter substrate binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1961525 - 1962415 bp
Length : 891 bp
Strand : -
Note : Periplasmic solute binding protein family; ABC-type metal ion transport system, periplasmic component/surface adhesin

DNA sequence : 
GTGAATCTCCATAAAATCCGCCATGCCCTTTTTGCTTTTTCGCTTTTCCTGCCTGCTGCGGCTGTCGCGCAGGAAAAACC
GAAGGTGGTGACCACCTTCACGATCATTGCCGATATGGCGCGCAATGTGGCGGGCGATGCGGCAGAGGTTGAGAGCATCA
CCAAGCCAGGCGCTGAAATTCACAACTACCAGCCGACGCCTCGCGACATTCTCAAGGCCCGCAAGGCCGATCTGGTGCTG
CGCAACGGCCTCAATCTGGAATTGTGGTTTGAGAAGTTTCTGGCCAATCTTTCAGGCGTGCCTGATGTGACTGTCAGCGA
CGGCATCGAACCGATGGCGATCAATGGCGGGGCGTATCAGGGGAAACCCAACCCGCACGCCTGGATGTCACCCGATAACG
CCTTGATCTATGTGGAAAATATCCGCAAGGGACTCGCTGGAATAGATCCCGCCCACGCCGAGATTTACGCCGCCAATGCC
AAGGCCTATTCCGACAAGATCCGTGCCACCGTGCAGCCCATCCGCGATGAGCTTTCCGCGCTTCCTGAGAACAAGCGCTG
GTTGGTAACGAGCGAAGGGGCGTTCTCCTATCTCGCCCGGGATTTCGGGCTGAAGGAACTGTTCCTGTGGCCGGTCAATG
CCGACAGCCAGGGTACGCCGCAACAGGTGCGCGGCGTGATCGACGCCATGCGCGAACATAATATTCAGGTCATCTTCAGC
GAAAGCACGGTTTCCGCCGATCCCGCCCGGCAGGTGGCCAAGGAAACCGGAGCGGCCTATGGCGGCATACTCTACGTGGA
TTCGCTGAGCGAAGCCGACGGCCCTGTTCCGACCTATCTCGACCTGCTGCGCGTGACGAGCAGCACCATCGCCAAAGGAC
TGTCTTCATGA

Protein sequence : 
MNLHKIRHALFAFSLFLPAAAVAQEKPKVVTTFTIIADMARNVAGDAAEVESITKPGAEIHNYQPTPRDILKARKADLVL
RNGLNLELWFEKFLANLSGVPDVTVSDGIEPMAINGGAYQGKPNPHAWMSPDNALIYVENIRKGLAGIDPAHAEIYAANA
KAYSDKIRATVQPIRDELSALPENKRWLVTSEGAFSYLARDFGLKELFLWPVNADSQGTPQQVRGVIDAMREHNIQVIFS
ESTVSADPARQVAKETGAAYGGILYVDSLSEADGPVPTYLDLLRVTSSTIAKGLSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-91 68
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-91 68
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-91 68
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-91 68
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-91 68

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AGROH133_13722 YP_004444598.1 iron ABC transporter substrate binding protein BAC0349 Protein 1e-91 68
AGROH133_13722 YP_004444598.1 iron ABC transporter substrate binding protein BAC0439 Protein 5e-89 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AGROH133_13722 YP_004444598.1 iron ABC transporter substrate binding protein VFG0525 Protein 1e-91 68