Gene Information

Name : AGROH133_13712 (AGROH133_13712)
Accession : YP_004444596.1
Strain :
Genome accession: NC_015508
Putative virulence/resistance : Virulence
Product : iron ABC transporter, membrane spanning protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1959779 - 1960639 bp
Length : 861 bp
Strand : -
Note : ABC 3 transport family; ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGATAAACAGCCTTCTTGAGCCTTTCACCTATGGCTACATGCTGAACGCCATCTGGGTCAGCGCACTTGTGGGCGGCGT
CTGCGGCTTTCTTTCCGCTTATCTTATGCTAAAGGGCTGGTCGCTGATCGGCGACGCGCTCTCGCACGCCATCGTTCCCG
GCGTTGCGGGCGCTTATATGCTGGGGCTGCCCTTTTCGCTCGGCGCCTTTCTTTCCGGCGGGCTTGCGGCTGGCTCGATG
CTGTTCCTCAATCATAAAACCCGGCTCAAGGAAGACGCAATCATCGGCCTGATCTTCACCTCGTTCTTCGGGCTGGGGCT
GTTCATGGTGTCGCTGTCGCCCACCTCGATCAATATCCAGACCATCGTGCTTGGCAATATTCTGGCAATTACCACCGAAG
ACACGATCCAGCTTGCCCTGATCGGCGGCATCAGCCTCATCGTACTGGCGCTGAAATGGCGCGACTTCATGGTGGTGTTC
TTCGATGAGAACCATGCGCGCACAGTGGGGCTGAAACCGGAAGTGCTGAAAGTGATCTTCTTCACCCTGCTTGCCGCCTC
CACGGTTGCAGCCCTTCAAACCGTCGGCGCCTTCCTTGTCGTTGCCATGGTGGTGACCCCAGGCGCGACCGCCTATCTTC
TGACCGACCGTTTCGAGCGGCTGATCCTGATGAGCCTCGTGATCGGCGCGACCACCAGCTTCGTCGGCGCTTATCTCAGC
TACTTCCTCGACGGCGCCACCGGCGGCGTTATCGTCGTACTGCAAACAGCGATCTTCCTTTCCGCTTTCGTGTTTGCACC
CAAACACGGGCTGCTCGCTTCGCGCGCCAAAGCGCGCAAGGCACTGGGAGAAGCGCAATGA

Protein sequence : 
MINSLLEPFTYGYMLNAIWVSALVGGVCGFLSAYLMLKGWSLIGDALSHAIVPGVAGAYMLGLPFSLGAFLSGGLAAGSM
LFLNHKTRLKEDAIIGLIFTSFFGLGLFMVSLSPTSINIQTIVLGNILAITTEDTIQLALIGGISLIVLALKWRDFMVVF
FDENHARTVGLKPEVLKVIFFTLLAASTVAALQTVGAFLVVAMVVTPGATAYLLTDRFERLILMSLVIGATTSFVGAYLS
YFLDGATGGVIVVLQTAIFLSAFVFAPKHGLLASRAKARKALGEAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-84 76
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-84 76
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-84 76
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-84 76
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-84 76

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AGROH133_13712 YP_004444596.1 iron ABC transporter, membrane spanning protein BAC0351 Protein 2e-84 76
AGROH133_13712 YP_004444596.1 iron ABC transporter, membrane spanning protein BAC0441 Protein 9e-75 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AGROH133_13712 YP_004444596.1 iron ABC transporter, membrane spanning protein VFG0527 Protein 2e-84 76