Gene Information

Name : AGROH133_13703 (AGROH133_13703)
Accession : YP_004444595.1
Strain :
Genome accession: NC_015508
Putative virulence/resistance : Virulence
Product : iron ABC transporter, membrane spanning protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1958928 - 1959782 bp
Length : 855 bp
Strand : -
Note : ABC 3 transport family; ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGAGCGAATATCTCGAACTCGCCATCCTGCCGTTTCAGCTGCCCTTCATGCAATATGCCTTCATCATCACCCTGATGAT
TGCCGTGCCGATGGCGATGCTCTCGTGTTTTCTGGTGCTGAAGGGCTGGTCGCTGATGGGGGACGCAGTTTCGCACGCCG
TGCTGCCCGGCGTGGTGATTGCCTACATTGTCGGAATTCCCCTTTCCATCGGCGCCTTCCCCGCCGGTATGATCTGCGCT
CTTGGAACCGGTTTCATCAAGGAAAACAGCCGCATCAAGGAAGACACTGTGCTCGGCATCGTCTTTTCCGGCATGTTCGG
GCTGGGGCTGGTGCTTTACGTGAAGGTGCAGAGCGACATGCATCTGGATCACATCCTCTTCGGCGACATGCTGGGCATTG
CGCCTTCAGACATGCTGGAGACCGGGCTGATCGCGCTTTTTGCCACCCTGTTTCTCGGGGTGCTGCGCAAAGACCTGCTG
GTCAATGCCTTCGATCCGCAGCATGCCAAGGCAATCGGCCTGCCCGTTCGCATCCTGCATTACGGTCTGCTGATGGTTTT
GTCGCTTGCCGTGGTCGGCGCGCTGAAGGCTGTGGGTATCATCCTCACCGTCGCAATGCTGGTCACCCCCGGCGCCATCG
CCTTCCTGCTGGCGCGGCGCTTTTCCGCCATGCTCCTGGTCGCCATCTCGGTTGCGGTTCTCTCTTCGCTTGCAGGAATA
TGGCTAAGCTTCCTGATCGACAGCGCGCCGGCCCCGACCATTGTACTGTTCATGAGCCTGGCATTCGTCGCGACATTCAT
TCGCACCAGCTTCAAGGCCCGCCGGATCGACGCCGCCAATGAAACGGTGGTGTAA

Protein sequence : 
MSEYLELAILPFQLPFMQYAFIITLMIAVPMAMLSCFLVLKGWSLMGDAVSHAVLPGVVIAYIVGIPLSIGAFPAGMICA
LGTGFIKENSRIKEDTVLGIVFSGMFGLGLVLYVKVQSDMHLDHILFGDMLGIAPSDMLETGLIALFATLFLGVLRKDLL
VNAFDPQHAKAIGLPVRILHYGLLMVLSLAVVGALKAVGIILTVAMLVTPGAIAFLLARRFSAMLLVAISVAVLSSLAGI
WLSFLIDSAPAPTIVLFMSLAFVATFIRTSFKARRIDAANETVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-76 58
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-76 58
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-76 58
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-76 58
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-76 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AGROH133_13703 YP_004444595.1 iron ABC transporter, membrane spanning protein BAC0352 Protein 1e-76 58
AGROH133_13703 YP_004444595.1 iron ABC transporter, membrane spanning protein BAC0442 Protein 5e-68 53
AGROH133_13703 YP_004444595.1 iron ABC transporter, membrane spanning protein BAC0441 Protein 3e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AGROH133_13703 YP_004444595.1 iron ABC transporter, membrane spanning protein VFG0528 Protein 1e-76 58