|
Name : AGROH133_13210 (AGROH133_13210) Accession : YP_004444421.1 Strain : Genome accession: NC_015508 Putative virulence/resistance : Unknown Product : oligopeptide ABC transporter nucleotide-binding protein/ATPase Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : 3.6.3.- Position : 1754663 - 1756273 bp Length : 1611 bp Strand : - Note : ABC transporter, nucleotide binding/ATPase protein (oligopeptide); ABC-type uncharacterized transport system, duplicated ATPase component DNA sequence : ATGAATACGACATCTGAAAACATTCTCACCGTCCGCAATCTCAAGGTCGATTTTGCCACGCCAGACGGCACGGTCAACGC CGTCAAAGGTGTCGATCTCCACGTAAAGCAGGGTGAAACGCTCGCTGTCGTCGGGGAATCCGGCTCCGGCAAAAGCCAGA CCATGATGGGCATCATGGGCCTCTTGGCTTCCAACGGCGTCATTCAAGGCTCGGCGCAATATCGTGGACGCGAGTTGGTA GGCTTGCCGGTCAACGAGCTGAACAAAATCCGTGGCGCGAAAATCACCATGATTTTCCAGGAGCCGATGACCTCGCTCGA TCCGCTTTACAGGATCGGCGCGCAGATCGCCGAGCCAATCGTCCATCACCGGGGCGGCAGCAAGAAGGAAGCGAGGGCAC GCGTTCTCGAGCTTCTGAAACTTGTCGGTATTCCAGACCCGGAGCGGCGCATCGACAGTTACCCGCATGAACTTTCAGGC GGCCAGCGCCAACGCGTCATGATCGCCATGGCGCTGGCAAACGAGCCGGATATTCTGATCGCGGATGAGCCAACCACCGC GCTCGACGTGACAATCCAGGCGCAGATCCTTGATCTTCTGAAGTCGTTGCAGCAGCGCTTCGGCATGGCCGTGGTGTTGA TAACGCACGATCTCGGTGTCGTCAGGCATTTTGCCGATCGTGTTGCGGTTATGCGCCGAGGCGAGATCGTTGAAACCGGT CCGACGGAAGAGGTCTTCGAGCGCCCGCAGGCGGACTATACGAGGATGCTTCTCGATGCCGAACCCAGCGGCCACAAGCC GCCGGTCGGCAAAGAAGCGCCGGTCGTTCTCTCTGGCCAGAACGTCACGATCGATTATGTGATCCCGGGCGGCTTCCTGT CGAAGTCACGGGCTTTCAGGGCCGTGGACAGCGTTAATGTCAGCCTTCATCAAGGGCAGACCATCGGCATCGTCGGTGAA TCCGGATCAGGCAAGTCCACGCTCGGTCGCGCGCTTCTGCGCCTTGTCACTGCAGAAGGCCGCATTTTCTTCGGCAAGAC GGAAATCACCGGACTTGGCCGAACGGCAATGAGGCCATTGCGGCGGCAGCTGCAGCTCGTGTTCCAGGATCCGTATGGAT CTCTTTCGCCAAGGCAGACTGTTGGAGAGATCATCACTGAGGGTCTCTTTGTGCACGACCCAAAGCTCAGCCGCGCGCAG CGCGACGAGCGAGCGATAGAAGCGCTGAAAGAAGTCGGCCTCGATCCCGCCGCCCGCAACCGCTACCCGCACGAGTTTTC AGGCGGGCAACGTCAGCGTATCGCAATTGCCCGCGCGATCATCCTCAAGCCAGATGTCGTCATTCTCGATGAACCTACAT CGGCGCTGGACCGATCCATTCAAGGACAAGTTATCGACCTCTTGCGTAATTTGCAGAAAACGCACAACCTTTCCTACATC TTCATCAGCCACGACCTCTCAGTCATAAAGGCCATTTCGGATTATGTCATCGTGATGAGAAACGGGAAGATTGTCGAAGA GGGAGAAACGGACGCGATATTCGAGCGGCCGGCGGCTGAATATACCAAAACACTGATTAAATCCGCGTTTTCGGCCGAAC TAACATCATAG Protein sequence : MNTTSENILTVRNLKVDFATPDGTVNAVKGVDLHVKQGETLAVVGESGSGKSQTMMGIMGLLASNGVIQGSAQYRGRELV GLPVNELNKIRGAKITMIFQEPMTSLDPLYRIGAQIAEPIVHHRGGSKKEARARVLELLKLVGIPDPERRIDSYPHELSG GQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSLQQRFGMAVVLITHDLGVVRHFADRVAVMRRGEIVETG PTEEVFERPQADYTRMLLDAEPSGHKPPVGKEAPVVLSGQNVTIDYVIPGGFLSKSRAFRAVDSVNVSLHQGQTIGIVGE SGSGKSTLGRALLRLVTAEGRIFFGKTEITGLGRTAMRPLRRQLQLVFQDPYGSLSPRQTVGEIITEGLFVHDPKLSRAQ RDERAIEALKEVGLDPAARNRYPHEFSGGQRQRIAIARAIILKPDVVILDEPTSALDRSIQGQVIDLLRNLQKTHNLSYI FISHDLSVIKAISDYVIVMRNGKIVEEGETDAIFERPAAEYTKTLIKSAFSAELTS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-80 | 44 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-80 | 44 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 1e-80 | 44 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 1e-80 | 44 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-103 | 42 |
