Gene Information

Name : Thena_0409 (Thena_0409)
Accession : YP_004437183.1
Strain : Thermodesulfobium narugense DSM 14796
Genome accession: NC_015499
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 419726 - 420799 bp
Length : 1074 bp
Strand : -
Note : COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: dap:Dacet_0760 integrase catalytic region; PFAM: Integrase, catalytic core; SPTR: Integrase catalytic region; IMG reference gene:2504783787; PFAM: Bacterial regulatory protei

DNA sequence :
ATGATTAGCAAGGAGGAGTTTGTTTTGATTCACACACTGTATGCACAGGGAGTTTCCATAAGAAAGATTGCCCATATGTT
GGGCATTAATAGACGGACTGTCTCAAAGAGATTAAAGGAGAAGGATCTAGAACCCTACAGCAAAAGGACTTATCCTTCAA
AACTTGATAAATTCAAAGACTACATAAACAAAAGGATAAGTCAGGCTCATCCAGACAGAATTCCATCTACAGTGCTTTTG
AATGAAATTAAGGATATAGGATATGAAGGAAGTCTAAGAATACTTCAGGAATACACAAAATCAGTTTATGACAAACTAAA
GCTAAATAAAAAAGAAAATGAGGAAATTATCAGGTTCGAAACAGATAAAGGCTTTCAAGCTCAAGTTGACTGGACAACTG
TTAGAAGTGGAAAGAAGCCAATCTATGCTTTTGTTATGGTTTTATCCTATTCAAGAGCAGCTTTTGTTTACTTTACAGAC
AACATGTGGCAGGACATATTCCAATCCTGCCACATAAAAGCGTTTGACTACTTTGGCGGGATACCAAAGACTATACTCTA
TGATAACCTAAAATCTGTAGTAATTCAAAGAGATAAATATGGGCAAAATGAACATGGCTTTAACAACAAATTTCTTGATT
TTTCCAAAGGTCTATTTATACCAAAACTATGTAAGCCCTACAGAGCTAAAACCAAGGGAAAGGTTGAAAGATTCAATCTA
TATCTAAAAAATAACTTTTATAAACCATTGAAGGCAAAGCTAAAGAATACGCCAATAGATATAACACCAGATCTCTTAAA
TGCCTATATATTTTCCTGGCTTACCAGTGCAAATAACAGGATTCATGCAACAACAAACAAAAAACCCTTTGATATGTTAA
AAGAGGAACTAAGTTATTTAAGTAAAGTACCAAATAATCTATTTGTAAGTGAAAAAGATAGTAATAAAAATAATATTAAA
GATAGTAATAAAAACAGTAAGAAAGAAGTTTACATGGACAAAAGCTTTCATCCTTACTACACAAACCTTTCTGAGTATGA
AAAGCTCTTAATAGGAGAAGACAACTATGCTTAA

Protein sequence :
MISKEEFVLIHTLYAQGVSIRKIAHMLGINRRTVSKRLKEKDLEPYSKRTYPSKLDKFKDYINKRISQAHPDRIPSTVLL
NEIKDIGYEGSLRILQEYTKSVYDKLKLNKKENEEIIRFETDKGFQAQVDWTTVRSGKKPIYAFVMVLSYSRAAFVYFTD
NMWQDIFQSCHIKAFDYFGGIPKTILYDNLKSVVIQRDKYGQNEHGFNNKFLDFSKGLFIPKLCKPYRAKTKGKVERFNL
YLKNNFYKPLKAKLKNTPIDITPDLLNAYIFSWLTSANNRIHATTNKKPFDMLKEELSYLSKVPNNLFVSEKDSNKNNIK
DSNKNSKKEVYMDKSFHPYYTNLSEYEKLLIGEDNYA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 8e-58 44
unnamed CAA21403.1 - Not tested HPI Protein 8e-58 44
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 7e-58 44
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 7e-58 44
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 7e-58 44
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 7e-58 44
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 6e-58 44
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 8e-58 44
api83 CAF28557.1 transposase Not tested YAPI Protein 6e-58 44
y2411 NP_669718.1 transposase Not tested HPI Protein 8e-58 44
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 6e-58 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thena_0409 YP_004437183.1 integrase catalytic subunit VFG1626 Protein 4e-58 44
Thena_0409 YP_004437183.1 integrase catalytic subunit VFG1607 Protein 4e-58 44
Thena_0409 YP_004437183.1 integrase catalytic subunit VFG1514 Protein 4e-58 44
Thena_0409 YP_004437183.1 integrase catalytic subunit VFG1461 Protein 3e-58 43