Gene Information

Name : Glaag_0778 (Glaag_0778)
Accession : YP_004433009.1
Strain : Glaciecola sp. 4H-3-7+YE-5
Genome accession: NC_015497
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 894941 - 896221 bp
Length : 1281 bp
Strand : +
Note : KEGG: pat:Patl_0772 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGATCGTTCTTGTGTTGTTTATATCCCCCATTGTGCTTATCGCTATTGGCACTCCGGTGGCGTTTGCATTGATCCTCTC
TTCACTGTTGGCCATTTCGCTGGATGGAGATATACCAAACTTAGTGGTGCTGCACAGCATGGTAGGGGGGATGAATAGCT
TCCCTTTGTTGTCTATTCCCTTCTTTGTGCTGGCGGGAGCCTTAATGAACTCAGCTGGCATCACCCAGCGAATATTTGAT
TTTGCTAATGCGCTAGTAGGGTGGTTGCGCGGTGGTTTAGGACACGTCAATGTTGGGGCATCAATTCTGTTTGCGGGTAT
GTCAGGTGCGGCGGTTGCCGATGCTGGCGGGTTAGGCGCCATTGAAGTCAAAGCGATGCGGGATAAAGGCTATGACGCAG
GTTTTGCTGTTGGTGTAACGGCGGCATCGTCAACTATCGGGCCTATCATTCCGCCTAGTTTGCCGCTGATTATTTACGCT
GTGATGTCTTCTGCTTCTATTGGTCAGTTATTTGCCGCAGGGATGATCCCTGGCCTGATCATGGCGCTTGCGTTGATGTT
GATGGTGGCTTGGTATGCTAAGAAGCGCAATTATCCAAAGGATTCAGGTTTCTCTGTGCTGCGCTGTACGACAACATTTA
GCCGCGCGTTTTTATCTTTGATGACCCCTGTGTTGATTATTGGTGGCATTTTGTTTGGCTTGTTTACCGCGACGGAAGCG
GCTATTGCAGCAAGTGCCTACGCATTATTTTTAGGTGCGGTTGTTTACCGAACGCTCACCATTAAAAAGCTTCTGGCGTT
GAGTATTGAAACCATTGAAACGACAAGCATTATTATGTTGATCATAGGCGGTGCCGCGATTTTTTCTTGGGTGCTGACCA
CACAACACATAACTGAAAACTTCACCCAATGGATGCTTGCATTTACTGACAGTAAAGTGGCGATACTATTGCTGATCACC
TTGATCTTATTCATTGTTGGTTGTTTTATGGAAACCATAGCCGCGATCACGATCTTGACCCCAGTGTTGCTACCCGTCGC
GGTGAGTTTAGGCATAGATCCAGTTCATTTCGGGGTAATGATGGTGTTGAACTTGATGATTGGTTTGTTGACACCGCCCG
TTGGGATGGTGCTCTATGTATTATCTAGGGTGACGCAGGTACCGTTCGAAACGTGCGCTCGGGCAACCTTTCCTTTCTTA
GTACCACTGCTTTTTGTTTTGCTGCTCGTCACCTTTATCCCGCAGCTGACGCTGTGGTTACCATCAGTGTTATACCCATA
A

Protein sequence : 
MIVLVLFISPIVLIAIGTPVAFALILSSLLAISLDGDIPNLVVLHSMVGGMNSFPLLSIPFFVLAGALMNSAGITQRIFD
FANALVGWLRGGLGHVNVGASILFAGMSGAAVADAGGLGAIEVKAMRDKGYDAGFAVGVTAASSTIGPIIPPSLPLIIYA
VMSSASIGQLFAAGMIPGLIMALALMLMVAWYAKKRNYPKDSGFSVLRCTTTFSRAFLSLMTPVLIIGGILFGLFTATEA
AIAASAYALFLGAVVYRTLTIKKLLALSIETIETTSIIMLIIGGAAIFSWVLTTQHITENFTQWMLAFTDSKVAILLLIT
LILFIVGCFMETIAAITILTPVLLPVAVSLGIDPVHFGVMMVLNLMIGLLTPPVGMVLYVLSRVTQVPFETCARATFPFL
VPLLFVLLLVTFIPQLTLWLPSVLYP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 4e-55 53
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 3e-55 53
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 4e-55 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Glaag_0778 YP_004433009.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 2e-55 53