Gene Information

Name : Glaag_3089 (Glaag_3089)
Accession : YP_004435291.1
Strain : Glaciecola sp. 4H-3-7+YE-5
Genome accession: NC_015497
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein RibD
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : -
Position : 3601644 - 3602762 bp
Length : 1119 bp
Strand : -
Note : KEGG: pat:Patl_1311 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding

DNA sequence :
GTGACGCAATTCTCTGCGCTTGACGCAAAAATGATGGCTCTGGCTATCCGCTTGGCTGAAAAAGGCCAATATACTACTTC
TCCGAATCCCAATGTGGGTTGCGTGCTCACTGATCCAAAGGGCAACATTGTAGGCCAAGGCTGGCACCAAAAGGCCGGTA
CTCCTCACGCTGAAATTCATGCCATTGCCCAAGCAGGTGAGCGCACTAAAGGCGCAACTGCTTATGTCACGTTAGAGCCG
TGTAATCATCATGGCCGCACTGGCCCGTGCTCTGAAGCGTTAATAAAAGCAGGGGTGAGTCGTGTTGTCGCTGCCATGGT
TGACCCAAACCCGTTAGTGGCAGGTAGTGGCTTACAAAAACTAAGCGACGCTGGTGTGGCCGTCAGCAGCGGTCTTCTTG
AGCGTGAAGCCAAGGCGCTAAACCTTGGTTTTATTAAGCGCATGAAAACCGGCATGCCTTGGGTCACGGTTAAGCTGGCA
TCAAGCTTAGATGGTAAAACCGCGTTAAATAATGGTGAAAGCCAGTGGATAACTGGGCCGCTTGCTCGTGAAGACGTGCA
GCGTCATCGTGCAAAGAGTTGTGCGATATTATCGGGCTCTGGCACGGTTTTGGCCGATAACCCTTCATTGAATGTGCGTT
ACAGCGAACTGGGTTTTGCCAAAAGTGAGCTGACAGAAGAAAGCTTGCGCCAGCCCGGGCGTATTTTACTCGACGGGCGA
AACCAGATGCGCCCCGACCTGCATTTATTTTCTTTATCGTCACCCATTGTGATTATCAATAGCCAGCCAAATACAGCTGA
TTTTCCGGCGCACGTTGAACAATATCAAGCCCTTTCGAACGGTGCGCAACTTGACCTGCACGATGTGATGAAACACCTTG
GTCAGCGTGGCTTTAATCAAATATGGGTCGAAGCAGGGGCTAAGCTTGCAGGGGCCTTATTGCAGAATAAATTGATCGAT
GAATTGATTTTGTACCAAGCGCCCAAACTATTAGGGGATAAAGGCCGAGATTTATTTGCTGTAGACGAATTAACCCAAAT
GCAGCAAGCTTTTGAATTACAATGGCAGGATGTACGCCAAGTGGGGCCTGATTTAAAGCTAACGGCACGCTTAACCTAA

Protein sequence :
MTQFSALDAKMMALAIRLAEKGQYTTSPNPNVGCVLTDPKGNIVGQGWHQKAGTPHAEIHAIAQAGERTKGATAYVTLEP
CNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQKLSDAGVAVSSGLLEREAKALNLGFIKRMKTGMPWVTVKLA
SSLDGKTALNNGESQWITGPLAREDVQRHRAKSCAILSGSGTVLADNPSLNVRYSELGFAKSELTEESLRQPGRILLDGR
NQMRPDLHLFSLSSPIVIINSQPNTADFPAHVEQYQALSNGAQLDLHDVMKHLGQRGFNQIWVEAGAKLAGALLQNKLID
ELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQVGPDLKLTARLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 4e-57 45
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 4e-57 45