Gene Information

Name : Glaag_2726 (Glaag_2726)
Accession : YP_004434934.1
Strain : Glaciecola sp. 4H-3-7+YE-5
Genome accession: NC_015497
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, transcriptional regulator, Fis family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3194688 - 3196037 bp
Length : 1350 bp
Strand : -
Note : KEGG: pat:Patl_1603 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
GTGAGTAAAAATGAAGCGTCGTTGAAGCCACAAATATTACTCGTAGATGATGATGAGAGTTTACTGCGATTAATGGCCAT
ACGCCTAGAAGGCGAAGGCTACAGTGTGCAAAGCGCAGAAGGTGGCAAAGAGGCCTTGCGTTTAATGAATACCCAAAACT
TTGATGCGGTATTAAGCGACCTTAGAATGCCAGGTCTAGACGGCTTGAGCTTGTTTGAAGAGATTATGTCTTTAGGCAAA
GACCTGCCTGTTATATTGATGACAGCCCATGGCACCATTCAAGACGCGGTAGAGGCGACCCAAAGAGGGGTCTTTGGTTT
CTTGACTAAGCCGATTGATCATACAGAATTACGCGATTTATTAGCCAAAGCGGTCAGTCAAAGTCAAGGCTCGCAAGCGG
GAGCGTGGCGAGAGCAAATCATCACCCGTTCTATGCAAATGGAGCAACTACTTGATCAAGCCCACCGAGTTGCACAACGT
GATGTCAGTGTTTTAGTCAGTGGTGCAAGTGGTACAGGTAAAGAGCTGCTAGCCAATGCTATTCATAAAGCCAGTAAACG
GGCTAACAAACCTTTTGTGGCAATAAACTGCGGTGCGTTACCGGAAAATCTTTTGGAGTCTGAATTATTCGGCCACGCCA
AAGGTGCGTTTACCGGTGCGGTAAATGAGCATCAAGGTTTGTTCAGAGAAGCCGATGGCGGTACCTTATTTTTGGATGAA
ATTGGCGATATGCCGACGCCTTTGCAAGTAAAATTATTACGTGCATTGCAAGAGCAAGTGATTCGCCCGGTAGGTAGCAG
CAAGCAAATCCCAGTTGATGTGCGAATTATCTCTGCGACACACAAGAATTTGTCCACAGAAATGAGCGAAGGGAATTTCC
GAGAGGATCTGTATTATCGCTTAAACGTGGTGAATTTAACCTTGCCCACGTTACGTGAACGTTCCGAAGATATTCCGTTG
CTGGCACGTTACTTATTAAAGAAAAGCGCCGAGCGTCATGAAGTACGTGTGAGTCGTTTCTCAGATGATGCAATGCAATT
GTTGACCACCGAGTTATGGCCAGGAAACGTTCGCCAATTAGTCAATGTGGTCGAGCAATGCGTGGCATTAACGCAAACAT
CCGTTATTGCTGTGCATCTTGTAGAACAAGCTTTGTCTAGCTCAGAACAAAAGTGGCCAACGCTTACCGAAGCTCGTGAC
GCATTTGAGCAAAGCTACTTGCTTAAGTTACTGAAAATGACAGACGGTAACGTAACGCGCGCTGCTGAAATTGCCGGGCG
TAATCGAACTGATTTACACAAGCTAATGAAAAAGCATGATTTGCACTCGACCGATTTCAAGCATGATTAG

Protein sequence : 
MSKNEASLKPQILLVDDDESLLRLMAIRLEGEGYSVQSAEGGKEALRLMNTQNFDAVLSDLRMPGLDGLSLFEEIMSLGK
DLPVILMTAHGTIQDAVEATQRGVFGFLTKPIDHTELRDLLAKAVSQSQGSQAGAWREQIITRSMQMEQLLDQAHRVAQR
DVSVLVSGASGTGKELLANAIHKASKRANKPFVAINCGALPENLLESELFGHAKGAFTGAVNEHQGLFREADGGTLFLDE
IGDMPTPLQVKLLRALQEQVIRPVGSSKQIPVDVRIISATHKNLSTEMSEGNFREDLYYRLNVVNLTLPTLRERSEDIPL
LARYLLKKSAERHEVRVSRFSDDAMQLLTTELWPGNVRQLVNVVEQCVALTQTSVIAVHLVEQALSSSEQKWPTLTEARD
AFEQSYLLKLLKMTDGNVTRAAEIAGRNRTDLHKLMKKHDLHSTDFKHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-69 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-69 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Glaag_2726 YP_004434934.1 two component, sigma54 specific, transcriptional regulator, Fis family BAC0467 Protein 7e-81 49
Glaag_2726 YP_004434934.1 two component, sigma54 specific, transcriptional regulator, Fis family BAC0089 Protein 1e-92 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Glaag_2726 YP_004434934.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG1214 Protein 5e-76 44
Glaag_2726 YP_004434934.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG1249 Protein 3e-69 44
Glaag_2726 YP_004434934.1 two component, sigma54 specific, transcriptional regulator, Fis family VFG0116 Protein 3e-61 42