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Name : Glaag_0143 (Glaag_0143) Accession : YP_004432380.1 Strain : Glaciecola sp. 4H-3-7+YE-5 Genome accession: NC_015497 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 169059 - 171131 bp Length : 2073 bp Strand : + Note : KEGG: pat:Patl_0231 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein DNA sequence : ATGAATTTTATCCAGCGAACAAGCCGTAATATTTTACCCAGCTTGTGCCTTATTATTGGAGCCGCATTTTTCTCTGCGTC AACCTATGTAGCAGCAAATGAATATTCCCCGAACTTTAAAAACACTGATATCGGTGAATTTATTAATATAGTGGGCAAGA ATTTAAAGAGAACCATTATAGTGGACCCCAACGTGCGGGGTAAAATTTCTGTGCGCAGTTACGACTTATTAAATGAAGAG CAATACTACCAATTCTTCTTAAATGTGTTGCAAGTATACGGTTATGCTGTGGTCGAAATGCCGACCGGTATCGTCAAGGT AGTGCGTTCAAAAGACGCTAAAACCTCTAACTTACCCGTCGTAGAAGGAACCCCTTTTGACGGTGATGAGATGATCACCC GAGTGATGCCTGTCTACAACGTGCCTGTGCGTGAACTTGCTCCTATTCTAAGACAATTAAACGATCAAGCTGGTGGTGGA AACGTGGTGAGCCACGACGCATCAAATGTAATGATGCTGACAGGCCGCGCGGCTGTGGTAAACCGTTTAGTCGAAATCAT TGAGCGCGTTGACAAAGCGGGTGATGAAGAAGTCGATATCGTTAAGTTAAAATTTGCCTCGGCATCAGAGCTAGTGCGCA TTATTGATAGTATCAACAAGTCCACAGGAAAAACTAACGCCAGTGGCAAAGATGCACCGCGGGTTGTGGCTGATGATAGA ACGAACAGTATTATGGTCAGTGGTGATATTAAAGCGCGCCAACGTATCGTTAATTTAATTGAACGCATGGACCAAGAGTT AGAAACCAACGGTAATACGCGGGTTATTTTTCTTAAATACTCAAAAGCAGAAGAACTAGTCAAAGTTTTACAAGGAGTAA GTGCCAGTATTCAAGCTGAAGAGCAAGGCGCTGCTAAATCATCTAGCAATTCTAATCGTGGTGACATCAGTATTGAGGCG CATGAGGACTCTAACGCATTGGTGATTACTGCACAGCCAGATATGATGCGCTCCTTAGAGGATGTGATCCGTCAATTGGA TATTCGCCGTGCGCAGGTTCAGGTTGAAGCGATTATTGTTGAAGTGTTTGAAGGTGACGGCACCACAGTCGGTGTGCAGT GGGCCAGCGAAGATTATGGCGCGCAGCAGTTCAGCAACGGTAATGTGGTCGGTATAGGCTCCTTAGCGGTAGCTGCAGAA CAAGCATCTGATACCACCACTACTACAGTCGGCTTTGATGACGATGGCGACCCCTATTCGTTTGATGAAACCACTGAGGG GGATTACACCGCGCTTGCGTCATTGCTGGGCGGCGTTAATGGTTTCTTGGTCGGTGCGGTTAAAGACGGCTGGGGCGCAG TACTGCAAGCGGTCAGTACAGATACCAACTCGAATGTTCTATCAACACCTCATTTAACCACTCTTGATAACGAAGAAGCG TTTTTCATCGTGGGTCAAGAAGTGCCGATTATTACAGGCTCAACAACAGGTTCAAATAATACCAACCCGTTCCAATCGGT TGAACGTCAAGAGATTGGTATAAAACTTAAAGTCACGCCGCAAATCAACGAAGGCAACGCGGTGCAACTGCTGATTGAGC AAGAAGTATCAAGTATTAGCGGTGCAACTTCGGTAGATATTTTAATCAACAAACGTGAGATTAAAACCAACGTTATCGTC GACGATGGTGGCACAATTGTATTGGGCGGTTTAATCGATGATGACGTACAAGAGAGTGTGTCTAAGGTACCAATTTTGGG CGATATTCCGTTTATTGGTAATCTGTTTAAATCTACCACGACCAGTAAATCTAAGCGTAACCTGATGGTATTTATTCGCC CTACGATTATTCGCGATGGAGTAACTGCGAATGATATAAGCCGTAAAAAGTATAACTACATTCGTGCTGAGCAACTTAAA CGTCAGTCCGAAGGGATCCCATTAATGCCGTTCTCTGAAAATCCAGCGTTACCAGAGTGGGATGATGGGCTAGCATTGCC GCCTTCATATGGCGAATACATGGAAAAAAGAGCCGAAGCTGAAAAGGCCGCTGAGAAAGAGGGTGATGAGTAG Protein sequence : MNFIQRTSRNILPSLCLIIGAAFFSASTYVAANEYSPNFKNTDIGEFINIVGKNLKRTIIVDPNVRGKISVRSYDLLNEE QYYQFFLNVLQVYGYAVVEMPTGIVKVVRSKDAKTSNLPVVEGTPFDGDEMITRVMPVYNVPVRELAPILRQLNDQAGGG NVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVDIVKLKFASASELVRIIDSINKSTGKTNASGKDAPRVVADDR TNSIMVSGDIKARQRIVNLIERMDQELETNGNTRVIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSSSNSNRGDISIEA HEDSNALVITAQPDMMRSLEDVIRQLDIRRAQVQVEAIIVEVFEGDGTTVGVQWASEDYGAQQFSNGNVVGIGSLAVAAE QASDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLVGAVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEA FFIVGQEVPIITGSTTGSNNTNPFQSVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGATSVDILINKREIKTNVIV DDGGTIVLGGLIDDDVQESVSKVPILGDIPFIGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTANDISRKKYNYIRAEQLK RQSEGIPLMPFSENPALPEWDDGLALPPSYGEYMEKRAEAEKAAEKEGDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-154 | 54 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 2e-160 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Glaag_0143 | YP_004432380.1 | general secretion pathway protein D | VFG2047 | Protein | 6e-152 | 54 |
