Gene Information

Name : Glaag_0130 (Glaag_0130)
Accession : YP_004432367.1
Strain : Glaciecola sp. 4H-3-7+YE-5
Genome accession: NC_015497
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 157067 - 157786 bp
Length : 720 bp
Strand : -
Note : KEGG: pat:Patl_0218 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
ATGACTGACAGAATTCTCATCGTTGAAGACGACCTTGATATCGCCAATCTAATGCGAGTCAACTTACTTGAGCTTGGCGT
TGAAATAGACCATCAAACAGACGGTCAACTCGCGCTCACTCAAGCACTCGAAAACGACTATTCGGTGATCTTACTGGATG
TGATGCTACCGAATATGAATGGGCTAGATATTTGTCGGCAAATTCGTGATAAGCGTCCAATGCAAATTATTATTATGCTG
ACGTCGAAAAACTCAGAGACCGACCGTGTTCTGGGGCTAGAACTAGGCGCAGATGATTATATGACCAAGCCTTTCAGCGT
TCGCGAATTGCAAGCAAGAGTACGCTCTCAATTACGCAAAGTGCATGTACTACAACAATCCCATGTGCCCTCCCCTCAAG
AAAGCGAAGCGTTGTGTATAGGTACTTTACGTATCGAGCAAAAAAATCATCAGGTGTTTTTAGCCGAACAGGAGCTGGTA
CTAACGGCCACAGAGTTTGAGCTGCTACATCACCTTGCTAACCATCCAGGCCAAGTCTTTAGCCGCAGCCAATTACTAGA
ATCAGTGTGGGGCTATCACCACAGCGGCTACGAGCATACGGTCAATTCGCATATTAACCGTTTACGAGCCAAGCTCGAAA
AAAACGCCACGTCTCCAAAAATAGTGCAAACAGTCTGGGGTGTGGGCTACAAATTTAATCCTCAAGGGGTATCCGACTAA

Protein sequence : 
MTDRILIVEDDLDIANLMRVNLLELGVEIDHQTDGQLALTQALENDYSVILLDVMLPNMNGLDICRQIRDKRPMQIIIML
TSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVHVLQQSHVPSPQESEALCIGTLRIEQKNHQVFLAEQELV
LTATEFELLHHLANHPGQVFSRSQLLESVWGYHHSGYEHTVNSHINRLRAKLEKNATSPKIVQTVWGVGYKFNPQGVSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-52 47
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 7e-52 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 3e-39 43
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_012469.1.7685629. Protein 1e-41 43
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family AF155139.2.orf0.gene Protein 5e-41 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_002952.2859905.p0 Protein 2e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_009782.5559369.p0 Protein 3e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_002951.3237708.p0 Protein 3e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_007622.3794472.p0 Protein 2e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_002758.1121668.p0 Protein 3e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_009641.5332272.p0 Protein 3e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_013450.8614421.p0 Protein 3e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_007793.3914279.p0 Protein 3e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_003923.1003749.p0 Protein 3e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family NC_002745.1124361.p0 Protein 3e-46 42
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 2e-44 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family VFG1563 Protein 1e-52 47
Glaag_0130 YP_004432367.1 two component transcriptional regulator, winged helix family VFG1702 Protein 3e-52 47