Gene Information

Name : Glaag_1284 (Glaag_1284)
Accession : YP_004433513.1
Strain : Glaciecola sp. 4H-3-7+YE-5
Genome accession: NC_015497
Putative virulence/resistance : Virulence
Product : flagellar protein export ATPase FliI
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 1496346 - 1497680 bp
Length : 1335 bp
Strand : +
Note : TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: pat:Patl_3044 flagellum-specific ATP synthase; SMART: AAA ATPase

DNA sequence :
ATGTCACTTTCGCTATTAGAAAATATTAAAGCACTGCAACAACAGGTACCTCAAGCGCCGGTCGTTGCAGCCGGCAAGCT
GGTGCGCGGAATTGGTTTAACATTAGAAGCTGTCGGCTGCCAAATGCCAGTGGGTAGCCAATGTTTGATTCAAACAGTAG
ATGGTGAAATTGAAGCTGAAGTGGTTGGATTTGCTGAGCATATTACCTATTTGATGCCTACTCAGGCAGTTAAAGGCATA
GTGCCAGGCTCGCGCGTTCAGCCACTTAACCGTGAACAAGGGCTACCCGTAGGTATGTCTCTTTTAGGGCGAGTGGTAGA
CGGCAATGGTCAACCTCTAGATGGTCTTGGGGCCATCAAAGCAGAAAAGCGCGTGCCGTTAACCCGCCCACCTATGAACC
CACTTTCCAGAAAGCCAATTCGCGAACCTCTAGATGTAGGCGTGCGAGCTATTAATAGCATGATTACAGTAGGCAGCGGC
CAACGCATGGGGTTGTTTGCAGGCAGTGGTGTGGGTAAAAGTGTATTGCTAGGCATGATGACCCGAGGCACGAGTGCCGA
TGTGGTAGTGGTGGGCTTGGTCGGTGAACGTGGGCGAGAAGTAAAAGAGTTTATTCAAGATATTTTAGGCGATGAAGAGC
GTCAAAAAGCCGTTGTCGTGGCGGCACCTGCCGATACATCCCCGTTAATGCGTTTAAAAGGATGTGAAACCGCCGTTACG
ATTGCCGAGTACTTTCGCGATAAAGGGATGAATGTTCTATTACTTGTTGATTCGCTGACCCGCTACGCGATGGCCCAGCG
TGAAATTGCTCTGGCGGTCGGTGAACCACCTGCAACCAAAGGCTACCCGCCTTCTGTATTTGCACGCTTGCCTGCATTAG
TTGAGCGGGCTGGAAATGGCGGGGAGAACCAAGGCTCTATCACCGCATTTTACACCGTGCTAACCGAAGGGGATGATTTA
CAAGATCCAATCGCTGACTCGGCACGAGCTATACTAGACGGGCATATCGTACTCTCGCGTCAACTAGCAGATTCAGGACA
TTACCCCGCCATTGATATTGAAGCTTCTATTAGCCGAGTGATGCCTATGGTTGTTAGCCCTGAGCATGTTCAAGTTGCTC
GGCGCATACGGCAAGTGTATTCAACTTACCAACAAAACCGCGATCTCATTAGCATTGGTGCATACACCAGAGGTAACGAT
CCGCGCATTGATTTATCTATTAAAGCTGAGCCTGCTATCAATGCTTTTTTACAACAAGGTATGCAGCAAATACTGACTTT
TGAAGAAAGTGTCGAAACTATGGTTAAGCTTGGTACTGGCTTAGGGCCCGCATGA

Protein sequence :
MSLSLLENIKALQQQVPQAPVVAAGKLVRGIGLTLEAVGCQMPVGSQCLIQTVDGEIEAEVVGFAEHITYLMPTQAVKGI
VPGSRVQPLNREQGLPVGMSLLGRVVDGNGQPLDGLGAIKAEKRVPLTRPPMNPLSRKPIREPLDVGVRAINSMITVGSG
QRMGLFAGSGVGKSVLLGMMTRGTSADVVVVGLVGERGREVKEFIQDILGDEERQKAVVVAAPADTSPLMRLKGCETAVT
IAEYFRDKGMNVLLLVDSLTRYAMAQREIALAVGEPPATKGYPPSVFARLPALVERAGNGGENQGSITAFYTVLTEGDDL
QDPIADSARAILDGHIVLSRQLADSGHYPAIDIEASISRVMPMVVSPEHVQVARRIRQVYSTYQQNRDLISIGAYTRGND
PRIDLSIKAEPAINAFLQQGMQQILTFEESVETMVKLGTGLGPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-82 52
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-73 50
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 3e-74 50
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-73 50
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-74 50
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-74 50
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-67 49
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-84 48
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-85 48
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-84 48
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-85 48
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 8e-86 48
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 8e-86 48
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-84 48
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-81 48
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-81 48
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-73 48
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-73 48
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-72 48
escN AAK26715.1 EscN Virulence LEE Protein 2e-72 48
escN AAL57542.1 EscN Virulence LEE Protein 2e-72 48
escN NP_290268.1 hypothetical protein Virulence LEE Protein 3e-72 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-72 48
ECs4568 NP_312595.1 EscN Virulence LEE Protein 3e-72 48
escN CAI43874.1 EscN protein Virulence LEE Protein 9e-73 48
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-72 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-72 48
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 1e-72 48
escN AAC31513.1 L0034 Virulence LEE Protein 2e-72 48
escN AAC38383.1 EscN Virulence LEE Protein 2e-72 48
unnamed AAL06369.1 EscN Virulence LEE Protein 4e-71 48
lscN AAO18044.1 LscN Virulence TTSS locus Protein 6e-75 47
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 2e-69 46
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 9e-70 46
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-66 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 3e-68 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 4e-68 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-73 45
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 4e-65 44
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 4e-65 44
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 2e-69 44
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 1e-69 44
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 5e-70 44
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 3e-55 44
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-57 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-57 42
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-57 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 6e-57 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG1254 Protein 2e-119 64
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG2499 Protein 1e-114 62
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG2331 Protein 1e-109 61
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG0515 Protein 2e-74 50
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG0048 Protein 5e-84 48
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG0812 Protein 1e-72 48
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG0730 Protein 1e-72 48
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG0390 Protein 9e-78 47
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG0192 Protein 1e-78 46
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG2144 Protein 9e-80 45
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG0555 Protein 3e-57 42
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG1778 Protein 3e-60 42
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG1008 Protein 1e-54 41
Glaag_1284 YP_004433513.1 flagellar protein export ATPase FliI VFG2459 Protein 2e-59 41