Gene Information

Name : Krodi_2791 (Krodi_2791)
Accession : YP_004432034.1
Strain : Krokinobacter sp. 4H-3-7-5
Genome accession: NC_015496
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 3158478 - 3159476 bp
Length : 999 bp
Strand : -
Note : PFAM: NAD-dependent epimerase/dehydratase; KEGG: gfo:GFO_2041 VipB-like polysaccharide biosynthesis protein

DNA sequence : 
ATGAATGACAATTTATATAATCAAGTCGAGGGAAAAAAAGTATTAGTAACGGGAGGAGCTGGATTTATAGGTTCGAATAT
TTGTGAGGTATTGATTGAGCATGGAGCAATAGTAACTTGTTTAGACAATCTAGCTACGGGTCACAAGCATAATCTTGATG
CTATTATGTCAAATCCTAACTTTACCTTTATAGAAGGAGATATTAGAGATATCAACGTATGTAAGAGCGGTGTTTCTAAT
TGTGACTATGTTCTTCATCAAGCTGCACTAGGATCGGTACCTAGATCTATTCAAGATCCTGCAACAAGTAATGAAGTAAA
TGTGGGAGGTTTTTTGAACATGCTTATAGCGTCTAAAGACAAGGGGGTGAAGCGCTTTGTGTATGCTGCGAGTTCCTCTA
CTTATGGTGATTCTCAAGGATTACCAAAGCAAGAAGATATTATTGGGAAGCCATTATCACCATATGCAATTACAAAATAT
GTAAATGAATTATATGCAGATGTATTTCATAAAACATATGGATTGGATTGTATAGGTTTGCGATATTTTAATGTTTTTGG
TCGTAAGCAAGATCCCAATGGGGCGTATGCCGCTGTTATTCCAAAATTTACAAAATTATTAATGGACCATGAATCGCCAG
TGATGAACGGTGATGGTACATTTTCTCGTGATTTCACGTATATTGACAATGTTATTCAAATGAATATTCGTGCTATGCTT
ACCGAGAATGAGGAAGCAATGAATACTGTATACAATGTTGCTTACGGAGAAAGAACTGATTTAAACGAACTTGTTGCGAT
ACTAAAAACTGAATTAAGTCAGTTTGATAGTGAAATTGCGGATGTTGAAATAAAATTTGGACCAAAAAGAGCTGGGGATG
TTCCACATAGCCTAGCGAGTATTGATCGCGCAAGAAGTAGAGTAGGGTACGACCCACAATTCAGTATTAAAGACGGACTC
AAAGAAGCAATGGCATGGTACTGGAAAAATTTAAAATAG

Protein sequence : 
MNDNLYNQVEGKKVLVTGGAGFIGSNICEVLIEHGAIVTCLDNLATGHKHNLDAIMSNPNFTFIEGDIRDINVCKSGVSN
CDYVLHQAALGSVPRSIQDPATSNEVNVGGFLNMLIASKDKGVKRFVYAASSSTYGDSQGLPKQEDIIGKPLSPYAITKY
VNELYADVFHKTYGLDCIGLRYFNVFGRKQDPNGAYAAVIPKFTKLLMDHESPVMNGDGTFSRDFTYIDNVIQMNIRAML
TENEEAMNTVYNVAYGERTDLNELVAILKTELSQFDSEIADVEIKFGPKRAGDVPHSLASIDRARSRVGYDPQFSIKDGL
KEAMAWYWKNLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 3e-76 52
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 3e-76 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Krodi_2791 YP_004432034.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 1e-76 52