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Name : Krodi_2315 (Krodi_2315) Accession : YP_004431561.1 Strain : Krokinobacter sp. 4H-3-7-5 Genome accession: NC_015496 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 2610249 - 2613164 bp Length : 2916 bp Strand : - Note : SMART: DEAD-like helicase; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; KEGG: dfe:Dfer_5242 type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit DNA sequence : ATGGGGCATCAATCTGAAGCGATATTAGAAAATAAGCTCATCAAGCAATTAGTTGGCCTGGGGTACACTAAAGTGAGTAT AGCTGATGGACATGCACTAGTTGCTAACTTAAAATCACAACTAGAAGCTTTCAATAATGATAGCTATACCGATAAAGAGT TTGATACGATTCTCAATGATTTAGCTAAAGGCAATGTATTTGAAAAGGCTAAAAAACTAAGAGACCGTTTTAGCTTCATA CGTACTAGCGCAACTGGAGAAGCAGAAGAAACTATCTACGTTCGCTTTTTTGATTCGGAAAACTGGAATAACAACCTTTT TCAAGTAACTAATCAAGTTACACAAGAAGGTTCATATAAAAATAGGTATGACGTTACTCTCCTTGTAAATGGTTTACCTC TAGTTCAAATAGAACTCAAACGCAGAGGGACTGAGATAAAGGAAGCTTTTAATCAAATAAATCGCTATCAACTACATTCG TTTTGGAGCAATCATGGCTTATTTCAATATGTCCAGCTTTTCGTTATTAGTAATGGAGGCAACACCAAGTATTTAGCCAA TAATAAACTGCAATCAGTAAAACAAACGTTCTTTTGGGCAGATACTAACAATAAAAATATTACCGAAATTATTGATTTTG CTTCTCAATTCTTAAACCCAAATCATTTGGGTAAAATGATAGCAAAGTATATCGTAATTAATGAGACGCATAAAATAATG ATGATATTGCGTCCGTATCAATACTATGCTGTTGAGGCCATTATTAAACAAGTTCAAACCACAACAGATAACGGTTACAT CTGGCACACTACCGGTTCTGGAAAAACGCTTACCTCCTTTAAAGCTAGCCAGATCTTAATGGAAGTTCCAGAAGTGACTA AAGTAGTGTTTGTAGTAGATCGTAAAGATCTGGATTATCAAACCATGAAGGAGTTTAATGCCTTTAAAGAAGGTAGCGTA GACACCACAAATAATACCAATAGTTTAGTAAATCAATTCTTAGGCACCTTTAAAGATAAAAAGGGTGTTCCTAAAGATTC AGATTTAATTATTACGACCATTCAGAAATTAAATAATGCAATCTCTGGGCACTATCGTAATAAATTGGAGCCTATAAAAA ATGAGCGTTACGTATTTATATTTGATGAGTGTCACCGTTCGCAGTTTGGCAAAACTCATAATAAAATAACCGAGTTCTTT ACCAATAGTCAACTCTTTGGTTTTACGGGAACGCCGATTTTCGCAGATAATGCGTCAAAAAATGACTTAGGTAAGCGCAC AACCAAAGATTTATTTGGAAATTGTTTACACAAGTACGTGATTACAGACGCGATTAAAGACGAGAATGTTCTTCGCTTTG GGATTGAATATGTAGGTAAATACAAAAACAAGAGTAATGCCTTTTTTGATATTGAAGTCGAAGACATTGATAAAAGAGAG GTCTTTAATGACCCCAAACGACTTTCAAAAATTGCAGATTACATCATTGCTCGACATTCACAAAAAACTTTTGATAAAGA CTACTCTAGTCTATTTGCTGTAAGTAGTATTGATAATGCTATTAAGTATTATGACATCTTCCAGAAAAAGAAAGAAGCTG GAGAACACGATTTGCGCATTGCTACGATATTTACGTATGGTGCAAATGAAGATAGTGACTTTGCTATAGATGCACTCCCA GACGATGAAATGTTGCAAGCTGCAGAACCTGCTTCTGCTTATACATTAAGCCATACAAGAGATAAATTAGAAAGCTACAT TGCAGATTACAATGCAATGTACAACACGAGTTTTACTACTAAAGACCAACAACAGTTTGAAAACTATTTTAAGGACATTA GTAAGCGACTAAAAGAACGTGAGAAAATCACCTTTGATGACGAAAAAGATAGACTTGATATCGTTATTGTGGTAAACATG ATGTTAACTGGTTTTGATGCGAAAAAGGTAAACACGCTCTACGTTGATAAAAATCTAAAACAACACGGCTTAATACAAGC GTTCTCTCGCACGAATAGAACTTTAGGAGATCAGAAGTCACAAGGAAACATATTGTGCTTCCGTAACCTTAAAAAAGCGA CAGATGATGCTATTACTCTATTCTCAAACAAAGATGCCATAGAAGTAGTTACTATGCCAGATTATGAGGCAATCGCAGTC AAGTTTGACGAAGCATTAAAAAATCTAAGAGATATTACTCCAACATATCAAAGTGTAAATGATTTGGCTAGTGAAGAAGA CGAGGCCGCCTTCGTACAAGCCTTTAGGAGATTGCTTAGAAACATGAATGTGTTGCAATCTTATACAGCTTTTGAGTGGG ATGATTTACATATAAGCGAGAAAGAGTTTGAAGATTATAAAGGCAAGTATTTAGATTTATATGATAAGGTAAAGCGTGAT ACAGCCAAGGAAAAGACATCTATCCTTGATGATATTGATTTTGAATTAGAATTAATACACAGAGATAGAATTAATGTTGC TTATATATTAAAACTACTCGCTAAACTCAAAGACGCAAATACAAGCGAAGCTCAGGCGCAGAAAAAAGCAATTATTGATT TACTAGGTGGAGATATTAAGCTTCGCAGTAAACGCGAACTCATTGAGAAATTCATCAATGAAAATCTTCCTCACATAAAA GATGAAGATGCCATTGAAGAAGAGTTTGAGCAGTACTGGCAAGATCAAAAAGTATTGGCTTTAGGAAAGCTCTGTGAAGA AGAACATTTAGATAAAGCACAGTTTAAGGCTTTAATTGACGCATACATCTATAGCGGTCAAGAACCCATAAGAGATGAAG TTTTTAAATGTCTAGATAATCGTCCAAGTATTTTAAAAGCCAGGGAAATAGGAGAACGAATACTAGAGAAGATGAAAGAA TTTGTAGAGGTATTTATACAAGGGATGACAGGGTAA Protein sequence : MGHQSEAILENKLIKQLVGLGYTKVSIADGHALVANLKSQLEAFNNDSYTDKEFDTILNDLAKGNVFEKAKKLRDRFSFI RTSATGEAEETIYVRFFDSENWNNNLFQVTNQVTQEGSYKNRYDVTLLVNGLPLVQIELKRRGTEIKEAFNQINRYQLHS FWSNHGLFQYVQLFVISNGGNTKYLANNKLQSVKQTFFWADTNNKNITEIIDFASQFLNPNHLGKMIAKYIVINETHKIM MILRPYQYYAVEAIIKQVQTTTDNGYIWHTTGSGKTLTSFKASQILMEVPEVTKVVFVVDRKDLDYQTMKEFNAFKEGSV DTTNNTNSLVNQFLGTFKDKKGVPKDSDLIITTIQKLNNAISGHYRNKLEPIKNERYVFIFDECHRSQFGKTHNKITEFF TNSQLFGFTGTPIFADNASKNDLGKRTTKDLFGNCLHKYVITDAIKDENVLRFGIEYVGKYKNKSNAFFDIEVEDIDKRE VFNDPKRLSKIADYIIARHSQKTFDKDYSSLFAVSSIDNAIKYYDIFQKKKEAGEHDLRIATIFTYGANEDSDFAIDALP DDEMLQAAEPASAYTLSHTRDKLESYIADYNAMYNTSFTTKDQQQFENYFKDISKRLKEREKITFDDEKDRLDIVIVVNM MLTGFDAKKVNTLYVDKNLKQHGLIQAFSRTNRTLGDQKSQGNILCFRNLKKATDDAITLFSNKDAIEVVTMPDYEAIAV KFDEALKNLRDITPTYQSVNDLASEEDEAAFVQAFRRLLRNMNVLQSYTAFEWDDLHISEKEFEDYKGKYLDLYDKVKRD TAKEKTSILDDIDFELELIHRDRINVAYILKLLAKLKDANTSEAQAQKKAIIDLLGGDIKLRSKRELIEKFINENLPHIK DEDAIEEEFEQYWQDQKVLALGKLCEEEHLDKAQFKALIDAYIYSGQEPIRDEVFKCLDNRPSILKAREIGERILEKMKE FVEVFIQGMTG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0054 | YP_300144.1 | type I site-specific restriction-modification system restriction subunit | Not tested | SCC15305cap | Protein | 2e-174 | 43 |
