Gene Information

Name : Krodi_1394 (Krodi_1394)
Accession : YP_004430645.1
Strain : Krokinobacter sp. 4H-3-7-5
Genome accession: NC_015496
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1559776 - 1560564 bp
Length : 789 bp
Strand : +
Note : KEGG: cat:CA2559_02040 zinc ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAGAGAGAATTTAAGTAATAGATTACAATCTTCTCCCCTTGGGGAAGATCAAGAGGGGAATATAGCTATTCGTGTTGA
TGACCTTACGGTTGCATATAACTATAAGCCGGTTCTTTGGGATATAGATCTAGAAGTGCCAGAAGGAGTGCTCATGGCTA
TTGTGGGGCCCAACGGCGCAGGTAAGTCTACGCTTATAAAATCTATTCTCGGTATTATAGATCCCATTGCTGGGAGCGTT
TCTATCTACGGAAAGCCATATGATAAGCAGCGCAAGCTAGTAGCATACGTTCCTCAAAAGGGAAGTGTAGATTGGGATTT
TCCCACCACGGCACTTGATGTGGTAACTATGGGAACCTACGGAAAATTGGGCTGGATAAAACGTCCTGGAAGCAAAGAAA
AACGAGCAGCGCTAGAGGCACTAGAGAAAGTTGGGATGCTTCCATTCAAGGCGAGACAAATAAGCCAACTTTCAGGAGGG
CAGCAACAGCGTGTTTTCCTTGCGAGAGCACTAGTGCAAGATGCAGCTATCTATTTTATGGATGAGCCTTTTCAAGGAGT
AGATGCAACCACGGAGATTGCTATTATTAATATTCTTAAAGAATTACGTAAAGCAGGAAAAACGGTAGTGGTAGTGCATC
ACGATTTACAAACGGTACCAGAATATTTTGACTGGGTAACTTTTTTAAATGTAAAGAAAATCGCAACAGGACCTGTGAGA
GATATATTTAATGATGATAATCTCACCAAGACTTATGGTATTAATTACAAGGTGGCGGTAAATAAATAG

Protein sequence : 
MRENLSNRLQSSPLGEDQEGNIAIRVDDLTVAYNYKPVLWDIDLEVPEGVLMAIVGPNGAGKSTLIKSILGIIDPIAGSV
SIYGKPYDKQRKLVAYVPQKGSVDWDFPTTALDVVTMGTYGKLGWIKRPGSKEKRAALEALEKVGMLPFKARQISQLSGG
QQQRVFLARALVQDAAIYFMDEPFQGVDATTEIAIINILKELRKAGKTVVVVHHDLQTVPEYFDWVTFLNVKKIATGPVR
DIFNDDNLTKTYGINYKVAVNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-44 48
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 5e-44 48
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-47 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-47 42
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-48 42
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 9e-49 42
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-49 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Krodi_1394 YP_004430645.1 ABC transporter BAC0400 Protein 2e-73 62
Krodi_1394 YP_004430645.1 ABC transporter BAC0440 Protein 8e-47 44
Krodi_1394 YP_004430645.1 ABC transporter BAC0350 Protein 4e-49 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Krodi_1394 YP_004430645.1 ABC transporter VFG0526 Protein 4e-49 42