Gene Information

Name : YE105_P0011 (YE105_P0011)
Accession : YP_004424913.1
Strain :
Genome accession: NC_015475
Putative virulence/resistance : Virulence
Product : YopB transmembrane effector protein
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 8795 - 10000 bp
Length : 1206 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTGCGTTGATAACCCATGATCGCTCAACGCCAGTAACTGGAAGTCTAGTTCCCTACATCGAGACACCAGCGCCCGC
CCCCCTTCAGACCCAACAAGTCGCGGGAGAACTGAAGGATAAAAATGGCGGGGTGAGTTCTCAGGGCGTGCAGCTCCCTG
CACCACTAGCAGTGGTTGCCAGCCAAGTCACTGAAGGACAACAGCAAGAAATCACTAAATTATTGGAGTCGGTCACCCGC
GGCACGGCAGGATCTCAACTGATATCAAATTATGTTTCAGTGCTAACGAATTTTACGCTCGCTTCACCTGATACATTTGA
GATTGAGTTAGGTAAGCTAGTTTCTAATTTAGAAGAAGTACGCAAAGACATAAAAATCGCTGATATTCAGCGTCTTCATG
AACAAAACATGAAGAAAATTGAAGAGAATCAAGAGAAAATCAAAGAAACAGAAGAGAATGCCAAGCAAGTCAAGAAATCC
GGCATGGCATCAAAGATTTTTGGCTGGCTCAGCGCCATAGCCTCAGTGGTTATCGGTGCCATCATGGTGGCCTCAGGGGT
AGGAGCCGTTGCCGGTGCAATGATGATTGCCTCAGGCGTAATTGGGATGGCGAATATGGCTGTGAAACAAGCGGCGGAAG
ATGGCCTGATATCCCAAGAGGCAATGCAAGTATTAGGGCCGATACTCACTGCGATTGAAGTCGCATTGACTGTAGTTTCA
ACCGTAATGACCTTTGGCGGTTCGGCACTAAAATGCCTGGCTGATATTGGCGCAAAACTCGGTGCTAACACCGCAAGTCT
TGCTGCTAAAGGAGCCGAGTTTTCAGCCAAAGTTGCCCAAATTTCGACAGGCATATCAAACACTGTCGGGAGTGCAGTGA
CTAAATTAGGGGGCAGTTTTGGTAGTTTAACAATGAGCCATGTAATCCGTACAGGATCACAGGCAACACAAGTCGCCGTT
GGTGTGGGCAGCGGAATAACTCAGACCATCAATAATAAAAAGCAAGCTGATTTACAACATAATAACGCTGATTTGGCCTT
GAACAAGGCAGACATGGCAGCGTTACAAAGTATTATTGACCGACTCAAAGAAGAGTTATCCCATTTGTCAGAGTCACATC
AACAAGTGATGGAACTGATTTTCCAGATGATTAATGCAAAAGGTGACATGCTGCATAATTTGGCCGGCAGACCCCATACT
GTTTAA

Protein sequence : 
MSALITHDRSTPVTGSLVPYIETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEITKLLESVTR
GTAGSQLISNYVSVLTNFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKS
GMASKIFGWLSAIASVVIGAIMVASGVGAVAGAMMIASGVIGMANMAVKQAAEDGLISQEAMQVLGPILTAIEVALTVVS
TVMTFGGSALKCLADIGAKLGANTASLAAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFGSLTMSHVIRTGSQATQVAV
GVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHT
V

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopB AAO18055.1 LopB Virulence TTSS locus Protein 2e-41 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE105_P0011 YP_004424913.1 YopB transmembrane effector protein VFG0379 Protein 3e-157 97
YE105_P0011 YP_004424913.1 YopB transmembrane effector protein VFG0203 Protein 2e-46 43