|
Name : CPSIT_1003 (CPSIT_1003) Accession : YP_004422764.1 Strain : Chlamydia psittaci 6BC Genome accession: NC_015470 Putative virulence/resistance : Virulence Product : putative general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1094749 - 1096242 bp Length : 1494 bp Strand : - Note : [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis DNA sequence : ATGGGCGGTAAGTCTTTACTCTCTCAAGAGCTTCTTAATGCTCTACCCTATAGCTTTCTAAAAAAACACTGTTTACTGCC ATTAGAAGAGCAGGAAAACGGCATAAAGATGGCTTATGCAAGCTCTACCTCTCTTATGGCGAAAGATGAGGTGCAGCTGC TTATAAAGAAGCCTGTGCTTTTTATCCTTAAGGATGAAACAGAGATCTTAAAAAGTTTACAAAAGATCTATTCGAATTTA GAAGGGAAGGCTTCTGACATGCTGTTAAGCATGAAAGAAGGGGAAATCTCTCAAGTAAGTGAAGAGGAAGATCTTTTAGA AAATACAGATGCTGTTCCTGTAGTGCGTTTTTTAAATCTCATTTTAAAAGAAGCTATAGAAGAGCGTACCTCGGATATTC ATTTTGAACCTTTGGAAGATTCTTTGCGCATACGCTATCGTATCGATGGAGTCTTACACGATCGTCTTTCTCCGCCTGCA CATCTACGTTCGGCTTTGATCACTAGGATTAAAGTTTTGGCAAAGATGGACATAGCAGAGCATCGTCTGCCGCAAGATGG AAGAATAAAAATCCAAATAGGTGGTCAGGAAATTGACATGCGTGTGAGTACGGTTCCTGTGATCCATGGAGAGCGTGTTG TCCTGAGGATTTTAGATAAGCGTAATGTGATTCTCGATATCTCTGGATTGCACATGCCTAAGAATATCGAAAAGTCTTTT AAAGAGGTCATTGCTGTTCCTGAGGGTATCCTCTTAGTGACAGGACCCACAGGAAGCGGAAAAACCACAACTTTGTATAG TGTGATACAGCATCTTTCCGGTCCTTTTGCCAACATTATGACCATAGAAGATCCTCCTGAATACAAGTTGGCAGGAATAG CTCAGATTGCTGTGAAGCCTAAAATTGGTTTGTCTTTTGCATGTGGCTTAAGACATTTGCTTCGTCAGGATCCTGATGTT TTAATGGTTGGGGAGATTCGTGATCAGGAGACAGCAGAAATAGCGATACAGGCGGCACTCACGGGACACCTTGTTGTTAG TACATTGCATACTAACGACGCAATTTCTGCGATCCCCCGCCTTTTAGATATGGGAGTAGAACCCTATTTACTTTCGGCAA CAATTCTCGGTGTTGTAGCGCAAAGGTTGGTAAGGAAAATTTGTCCCAACTGTAAGGAGCGTTGTGCAGCAAGTGTTCAG GAACAGGCGTTTCTACACTCTATAGGTATTGATGCCGATGTGCCGTTATATTGTGGAAAGGGATGTGCTCAGTGTTTCCG TTCAGGATATAAGGGTCGTCAGGGAATTTACGAATTCTTACACCCTGATGCAGCCTTGCGTTCAGAAATAGCTATGCACA AGCCCTATCATGTGTTGCGAGAATATGCCGAACAGAAAGGATTTCAACCTTTATTACAACATGGTGTTGCTCTAGCTCTT TCAGGAGAGACGACTTTGTCGGAAGTGTTCCGTGTTACGAAACGGTATGATTAA Protein sequence : MGGKSLLSQELLNALPYSFLKKHCLLPLEEQENGIKMAYASSTSLMAKDEVQLLIKKPVLFILKDETEILKSLQKIYSNL EGKASDMLLSMKEGEISQVSEEEDLLENTDAVPVVRFLNLILKEAIEERTSDIHFEPLEDSLRIRYRIDGVLHDRLSPPA HLRSALITRIKVLAKMDIAEHRLPQDGRIKIQIGGQEIDMRVSTVPVIHGERVVLRILDKRNVILDISGLHMPKNIEKSF KEVIAVPEGILLVTGPTGSGKTTTLYSVIQHLSGPFANIMTIEDPPEYKLAGIAQIAVKPKIGLSFACGLRHLLRQDPDV LMVGEIRDQETAEIAIQAALTGHLVVSTLHTNDAISAIPRLLDMGVEPYLLSATILGVVAQRLVRKICPNCKERCAASVQ EQAFLHSIGIDADVPLYCGKGCAQCFRSGYKGRQGIYEFLHPDAALRSEIAMHKPYHVLREYAEQKGFQPLLQHGVALAL SGETTLSEVFRVTKRYD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-97 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-97 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPSIT_1003 | YP_004422764.1 | putative general secretion pathway protein E | VFG0182 | Protein | 1e-95 | 48 |
| CPSIT_1003 | YP_004422764.1 | putative general secretion pathway protein E | VFG1876 | Protein | 2e-96 | 47 |
| CPSIT_1003 | YP_004422764.1 | putative general secretion pathway protein E | VFG2426 | Protein | 4e-76 | 47 |
| CPSIT_1003 | YP_004422764.1 | putative general secretion pathway protein E | VFG2048 | Protein | 1e-98 | 46 |
| CPSIT_1003 | YP_004422764.1 | putative general secretion pathway protein E | VFG1880 | Protein | 4e-75 | 45 |
