Gene Information

Name : CPSIT_0178 (CPSIT_0178)
Accession : YP_004422013.1
Strain : Chlamydia psittaci 6BC
Genome accession: NC_015470
Putative virulence/resistance : Virulence
Product : putative sigma-54 dependent response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 163310 - 164470 bp
Length : 1161 bp
Strand : -
Note : [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism

DNA sequence : 
ATGACTATAGAAAAAGTATTGATAGTAGATGACGAGCCCTTATTAAGAGATTTTCTTTCTGAGCTTCTTCTAACCAGAGG
ACTCTCTCCGTTTACTGCTGATAACGTGAAACAAGGCTGTCATAAGATCAAAACAGAGAAGTACGACCTGATTATTTCAG
ACATGAATATGCCTGATGGGACAGGAATCGACATCATCAAAACCGCTAAAGAATGTGCACCTCATACACCGGTTCTCGTG
ATCACGGCATACGGAACAATCGAAAATGCTGTAAAAGCAATGTATCATGGGGCATTTAACTACCTCACAAAACCCTTCTC
ATCGGAAGCTCTGTTTGCTTTCATAGCAAAGGCCGAGGAATTACAAAACCTTGTAAATGAGAATCTTTTGCTAAAATCGC
AAATTTCCTCAGAATCTCACCCTCTAATCGCCGAAAGCCCTGCAATGAAGGATTTGTTGTCTAAAGCAAGAAAAGCAGCA
GATAGCTCTGCTAACATCTTTATTCATGGCGAATCTGGTTGCGGGAAAGAAGTCCTTTCGTTTTTTATTCATAGAAATTC
CCCTAGAGCTGCACGCCCCTATATAAAGGTGAATTGCGCTGCTATTCCGGAAACGTTGTTAGAATCCGAGTTTTTTGGCC
ATGAAAAAGGCGCTTTCACAGGAGCAACAGGGAAAAAGGCTGGGCGTTTTGAGCTCGCACACACCGGAACTCTTTTACTC
GATGAGATCACGGAAGTTCCTATAAATCTTCAAGCCAAACTACTCAGAGCGATTCAGGAGAAAGAATTTGAACACCTTGG
AGGGACGAAAACCTTATCGGTAGACGTTCGTATCCTCGCCACATCCAATCGCAACCTTAAAGAAGCTGTAGATCAAAAAA
TTTTCCGACAAGATTTGTTTTATCGCCTTAACGTTATTCCCTTGTACCTCCCTCCCTTAAGAGAAAGAAAAGATGATATT
CTCCCTTTATCACAGTACTTTCTAGAGAAATTCTGTAGATTAAATAATAAACCAATGAAAACACTGTCGGAAAGCGCTAA
ATCTGCTCTTCTTGACTATCCTTGGCCTGGGAATATCCGCGAACTCTCCAATGTATTAGAGAGGGCGGTCATCCTAGAAA
GTCCCACCCACCTGACCGATGCTATGCTCGCTCTATCCTAA

Protein sequence : 
MTIEKVLIVDDEPLLRDFLSELLLTRGLSPFTADNVKQGCHKIKTEKYDLIISDMNMPDGTGIDIIKTAKECAPHTPVLV
ITAYGTIENAVKAMYHGAFNYLTKPFSSEALFAFIAKAEELQNLVNENLLLKSQISSESHPLIAESPAMKDLLSKARKAA
DSSANIFIHGESGCGKEVLSFFIHRNSPRAARPYIKVNCAAIPETLLESEFFGHEKGAFTGATGKKAGRFELAHTGTLLL
DEITEVPINLQAKLLRAIQEKEFEHLGGTKTLSVDVRILATSNRNLKEAVDQKIFRQDLFYRLNVIPLYLPPLRERKDDI
LPLSQYFLEKFCRLNNKPMKTLSESAKSALLDYPWPGNIRELSNVLERAVILESPTHLTDAMLALS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-56 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-56 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPSIT_0178 YP_004422013.1 putative sigma-54 dependent response regulator BAC0467 Protein 2e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPSIT_0178 YP_004422013.1 putative sigma-54 dependent response regulator VFG1249 Protein 3e-71 46
CPSIT_0178 YP_004422013.1 putative sigma-54 dependent response regulator VFG1214 Protein 2e-66 45
CPSIT_0178 YP_004422013.1 putative sigma-54 dependent response regulator VFG0116 Protein 3e-61 44