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Name : UMN179_00648 (UMN179_00648) Accession : YP_004419579.1 Strain : Gallibacterium anatis UMN179 Genome accession: NC_015460 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 688595 - 691756 bp Length : 3162 bp Strand : + Note : - DNA sequence : ATGCACATCAACGAATCCACAATAGAACATCAAGCGATTGAACAATTGCAATCGCTTGGTTGGCAATATGCTTACGGCAA GGAGGTGCTGCCTAATGAAGCTTACCCTTGGCGTGAAAGTCGCAATGAAGTGGTGTTAAAGCCGCTGTTATTACAAAGTT TGCAAAAAATTAATCCACATTTGCCGGAAGAAACGTTGCAAGAGGTGGTGAGCTCGGTGTGCAAAAGCGATATTTCGTCC GTGGAAGAACGTAATAGACAGTTTTACCAGCTGTTAAAGCAAGGGGTGAAAGTCCATTATCAGCAAAACGGACAGGAAAA AAATGATGTGGCGTTATTGGTGGATTTTAAACATCCGGAAAATAATCTGTTTTATGTGATTAATCAGTTGGAAATTCAAG GCATAAAGGGCAAGCGAATTCCTGATATTTTGTGTTTTGTGAACGGTTTGCCGTTGGTGATTTTTGAGTTAAAAAACCCG CTTGATGTTAAGGCGGATTTGGAGCGTGCCTTTAATCAGTTGCAAACTTATAAAAAAGAAATTGAAGAGCTGTTTGTATT TAATCAGATGATGCTGATTTCAGACGGCACCGCGGCACGAGTCGGTTCATTAACCGCCGATTTGCAACGTTTTTCCCCTT GGAAAGTGGTGGATGAAAGCAATCGCAGCCGGCGTTTAATCTTTGAGGATGAGCTTTCCGGCGTGTTGCAAGGCTTGTTT TCGCCGCAGGTGCTGCTGGATTATCTGCACGATTTTATTGTGTTTGAGAATGACAGCAAAGGTCGCACCATTAAAAAAAT TGCCGCCTATCATCAATTTTATGCAGTCAATGCGGCGGTGGAAGCCAGCATTCGCGCGGTGGAAAATAATAGCCGCAAAA TCGGTGTGGTTTGGCACACGCAAGGTTCGGGCAAATCGCTCTCAATGCTGTTTTATGCCGGCAAACTGATCAGCCAACCC GAGCTGAAAAATCCGACCATTGTGGTGGTGACCGACCGTAAGGATCTTGATGGACAGTTGTTCACCACCTTCAGCCAAGA TCAGGATATTACGCAACAGCCTCCCATTCAGGCAGATGGACGTGAAGCATTGCGTGAAGAGCTGGCAAAACGGGAAAGCG GCGGCATTATTTTTACCACGATTCAAAAATTCGGTTTACGTGAGGGCGAAGCGGATCATCCGGTGTTGAACAGTCGTCAT AATATTATTGTCATCAGCGATGAAGCGCACCGTTCGCAATATGGCTTTGCACAGAAAATTAATCAGGGAATGTATCGCGA GGGCTACGCTAAATATTTACGTACTGCGTTGCCGAATGCCGGTTTTATCGGTTTTACCGGCACGCCAATCAGTTTGGAAG ACAAAGATACACAAGAGGTTTTCGGCGACTATATTTCGATTTATGACATTTATGATGCGGTCGAAGATGGTGCGACTGTG CCGATTATTTATGAGGCTCGGCAAATTCCATTGACAGAGAGCAGTAAATATTCATTGGCAATGCGTGAAGCGGAAAATTT ACTTGATGATGACGATGAGGAGAATTTCCAATTCCGGTTGCGTGAACAGTTAATGGGCACGGAACAGCGTTTAAATCGTT TGGCAGAAGATCTGGTCAATCACTTTGAAATTCGTAATACCCTTGCCGAAGGTAAAGCGATGGTGGTGGTGATGAGCCGC CGCATTTGCGTGAAACTTTATAATGAAATCATTAAGTTACGCCCTGAATGGCATAGCGATGATGTCCATCAAGGCGCAAT CAAAATTATGATGACCGGCAATGCCGGCGATCCACCTGAAATGCAAGCACATATTTATTCTTCTCAAGATAAAAAGATCT TGGAAAAGCGGTTTAAAGATGCGGAAGATCCGCTAAAAATCGTGATTGTACGTGATATGTGGCTAACCGGTTTCGATGCA CCTTGTTGTCATACGATGTATATCGATAAGCCGATGCAAGGGCATAATTTGATGCAGGCGATTGCAAGGGTTAATCGTGT TTTCCGCAATAAAAGCAAGGATAACGGCGGTTTGATTGTCGATTATGTCGGCTTGGCGGAAGAGTTGAAACAGGCAACGA TTCAATACACAAACTCCGGCGGTAAAGATCGGGTGAAAACCGATATTGATCAGGTATTCCAAAAAATGTTGGAATATTTG GACATCATTAAAGGGCAATTTGCCACACCGGTAGACGGAAAAGTCTTTCCGCTCGGCGAAGCGTTAAAAATCAATCAACA GGATGCGTTAATAAAAGCCATTCTTCAGGCTGCCAATCATATTGTGGCATTAGATCGTGTTAATCAGCAAGCTGATGACA GCAGCGATAAAACACCAAGAAAAAATGCTTTTTTACAGGCAGTGCGTCAAGCGAAGAAAGGGTTGTCGTTATGTGGTGCA ATGGAAAAAGTGCAGCCTTATCGGCAACAGTTAGCATTTTTTGATGCCGTGCGTGCAACCATTATTAAACAGGAACGCCA AGCCCCATCATCTGCTTCACCGCAAGAACGGCAACTTAAATTAACCGCACTATTAAATCAGGCGGTACATTCGGAAGAGG CGATTGATCTGTTCGCTTTAATCGGTGAAAAACGCCCTGATATTTCGTTGTTGTCGGAAGAGTTTATGCAGATGGTGAAA GATAGCGACATTAAAGATTTGTGGCTAACCGCAATTGAGGGCTATCTTAAATCAGAAATTCGTGAGAAATCAGCCAATAA TTTGGCAACACAAAAACGCTTTGAAGAGAAATTAAAAGAGGCGATGAATCGCTATCACAATCATAATTTAACTGTGATAG ATATTATTAAAGAGTTGTTGGCAATGGCAAAAGAGTTTGAACAACAGCTCGCCAAAGGGCAAGAATTGGGGTTAAGCGAC ACTGAGTTGGCATTTTATGAAGCCTTAATTCGTAATCAGAGTGCGGTTGAAGTGATGGGTGATCAGGCGTTGATTCCGTT AGCGAAAGAGATTACTGAGCAATTACGTAAATCAGTTACTGTTGATTGGCAATATAAGGAGTCCGTTCGTGCCAAAATGC GCAGATTAATCAGACGCGCCTTATCAAAATATAAATACCCACCTGATCTGGAAAAAGAAGCGGTTGAATTTGTATTACAA CAGGCAGAAGTGGTTGCGGAACAATTAAGTGATAATGCTTAA Protein sequence : MHINESTIEHQAIEQLQSLGWQYAYGKEVLPNEAYPWRESRNEVVLKPLLLQSLQKINPHLPEETLQEVVSSVCKSDISS VEERNRQFYQLLKQGVKVHYQQNGQEKNDVALLVDFKHPENNLFYVINQLEIQGIKGKRIPDILCFVNGLPLVIFELKNP LDVKADLERAFNQLQTYKKEIEELFVFNQMMLISDGTAARVGSLTADLQRFSPWKVVDESNRSRRLIFEDELSGVLQGLF SPQVLLDYLHDFIVFENDSKGRTIKKIAAYHQFYAVNAAVEASIRAVENNSRKIGVVWHTQGSGKSLSMLFYAGKLISQP ELKNPTIVVVTDRKDLDGQLFTTFSQDQDITQQPPIQADGREALREELAKRESGGIIFTTIQKFGLREGEADHPVLNSRH NIIVISDEAHRSQYGFAQKINQGMYREGYAKYLRTALPNAGFIGFTGTPISLEDKDTQEVFGDYISIYDIYDAVEDGATV PIIYEARQIPLTESSKYSLAMREAENLLDDDDEENFQFRLREQLMGTEQRLNRLAEDLVNHFEIRNTLAEGKAMVVVMSR RICVKLYNEIIKLRPEWHSDDVHQGAIKIMMTGNAGDPPEMQAHIYSSQDKKILEKRFKDAEDPLKIVIVRDMWLTGFDA PCCHTMYIDKPMQGHNLMQAIARVNRVFRNKSKDNGGLIVDYVGLAEELKQATIQYTNSGGKDRVKTDIDQVFQKMLEYL DIIKGQFATPVDGKVFPLGEALKINQQDALIKAILQAANHIVALDRVNQQADDSSDKTPRKNAFLQAVRQAKKGLSLCGA MEKVQPYRQQLAFFDAVRATIIKQERQAPSSASPQERQLKLTALLNQAVHSEEAIDLFALIGEKRPDISLLSEEFMQMVK DSDIKDLWLTAIEGYLKSEIREKSANNLATQKRFEEKLKEAMNRYHNHNLTVIDIIKELLAMAKEFEQQLAKGQELGLSD TELAFYEALIRNQSAVEVMGDQALIPLAKEITEQLRKSVTVDWQYKESVRAKMRRLIRRALSKYKYPPDLEKEAVEFVLQ QAEVVAEQLSDNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 41 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 41 |
